Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02296 ATGGAAAATAAGAATGAGAAGAAAGATGTTGGCAATGCTGCCAGCAATGCAACCATAGGAAATGACAGCGTTTTTGCTTCTTGCTCCTTCTCTAGCCTTGGCCTTCACCCTTCCTTATGCGATGAACTGCGTGAAAAATTGGGATTCGAGGTTCCAACTCTGGTGCAAGCTCAAGCCATTCCTGTTATTCTCGCTGGCCGTCATGCACTTATTAATGCTGCCACAGGCACAGGGAAGACAGTTGCCTACTTAGCTCCACTTATTCATCACTTGCAGAATTATGATACTCGCATACAACGCTCTGATGGAACATTTGCGTTGGTCCTTGTACCGACGCGTGAGCTATGTCTGCAGGTTTATGAAATTCTTCAAAAGCTATTGCATCGATTCCATTGGATTGTTCCCGGGTATGTTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTACGCAAAGGCATATCAATTCTTATAGCAACACCTGGGCGCCTTTTAGATCATTTGAAGAATACATCATCATTCTTGTACACAAATAATTTGCTTTTTTCTGCCACCTTAAATGAGAAAGTGAACCATCTTGCTAAAATAAGTTTACACAATCCAGTGATGATTGGTCTTGAGGGTAAAACAAGAAAACCAGTATCAACAATTGAAAGCATTGATTCTTCAGAGTCTGATGAAGATGATGAAGTCAAGTATTCCAGTAAAATGCCAACAGCTGTAGATTATAAAATCCCCAGACAGTTAATTCAGAGATATGTGAAAGCAGTGCCTTGTGGTTCTCGGCTTGCTGTTCTTCTTTCAATTCTAAAGCATCTTTTTGAAAGAGACACTTCACAAAAGGTTGTGGTATTCTTTTCGACATGTGATGCGGTAGACTTTCACCATTCGCTACTAAGTGAGTTCCACTTCTCGACTGATCCTCAAACAAAAGAAAGGGTCATACAGATGTTTCTTGGATGCCAAACTTTTCGATTGCATGGTAATATGGAACATGAAGACCGGAGATCTACTTTTCAGGCTTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCAAAGGTTCGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTACACAGAGTTGGTAGAACTGCTCGTCTGGGTGAAAGGGGAGAGTCCTTATTATTTCTGCAACCAGTTGAAATAGATTATTTACAGGACTTGGAGAAACATGGTGTTTCACTAGCAGAGTATCCTCTTCTCAAAGTGTTGGATAATTTTACATTACACGGACAGAACAAACACGTAAAGAAGTCTGTTTTCATCGACTTGCATCCTTGGGTCCTTTGTCTCCAGAAGGCACTTGAATCATTCATCATTTCCAAGCCCAAGATGGATGAACTTGCTAGGAAGGGATTTTGCTCTTGGGTCCGTGCTTACACAGCACATCGTGTTTTGATGAAGCAAATGATAATGAAAATGACAACTATGGATGGATACCGACATACTGTGTCACGCGAATCTGGATCATTATCCCCTAAAGCCATAGGATTCGATACAAAGCTGACACCAAGTGATCCGAGATAA 1599 0.4115 MENKNEKKDVGNAASNATIGNDSVFASCSFSSLGLHPSLCDELREKLGFEVPTLVQAQAIPVILAGRHALINAATGTGKTVAYLAPLIHHLQNYDTRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTNNLLFSATLNEKVNHLAKISLHNPVMIGLEGKTRKPVSTIESIDSSESDEDDEVKYSSKMPTAVDYKIPRQLIQRYVKAVPCGSRLAVLLSILKHLFERDTSQKVVVFFSTCDAVDFHHSLLSEFHFSTDPQTKERVIQMFLGCQTFRLHGNMEHEDRRSTFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLAEYPLLKVLDNFTLHGQNKHVKKSVFIDLHPWVLCLQKALESFIISKPKMDELARKGFCSWVRAYTAHRVLMKQMIMKMTTMDGYRHTVSRESGSLSPKAIGFDTKLTPSDPR 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02296 532 MobiDBLite consensus disorder prediction 509 532 - -
Adu03g02296 532 Gene3D - 1 208 IPR027417 -
Adu03g02296 532 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 60 205 IPR014001 -
Adu03g02296 532 SMART ultradead3 48 221 IPR014001 -
Adu03g02296 532 Pfam DEAD/DEAH box helicase 54 173 IPR011545 GO:0003676|GO:0005524
Adu03g02296 532 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 270 439 IPR001650 -
Adu03g02296 532 Gene3D - 252 504 IPR027417 -
Adu03g02296 532 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 28 57 IPR014014 GO:0003724
Adu03g02296 532 Pfam Helicase conserved C-terminal domain 269 392 IPR001650 -
Adu03g02296 532 SMART helicmild6 310 392 IPR001650 -
Adu03g02296 532 PANTHER RNA HELICASE 15 176 - -
Adu03g02296 532 PANTHER RNA HELICASE 179 490 - -
Adu03g02296 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 413 IPR027417 -
Adu03g02296 532 CDD SF2_C_DEAD 250 401 - -
Adu03g02296 532 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 15 176 - -
Adu03g02296 532 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 179 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02296 Adu-Chr3 51257094 51262404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02296 22 424 Eukaryotic Initiation Factors Gene Family AT3G19760 24.634 1.11e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02296 K14806 - gmx:100805157 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g02296 03 51257094 51262404 Adu03g02296 03 51257094 51262404 ECH