Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02290 ATGAAGGCTCCTTCCAATGGTTTCTTGCCTAATTCTGGCGAAGGAGAAAAGAAAACAATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCATTGGTTTCTTTACCTCCTATTGGAAGTCTTGTGGTTTATTTCCCTCAAGGACACAGCGAACAAGTTGCAGCATCCATGCAAAAGGAGGCCGACTTCGTACCAAGTTACCCGAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGTCCTTCATGCTGATCCTGAAACTGACGAGGTTTATGCTCAAATGACCCTTCAACCTGTAAATAAATATGATAAGGAAGCAATACTGGCATCCGACATGGGTCTCAAGCAAAACCAGCAGCCTACTGAATTCTTTTGCAAAACTCTCACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCTCGTCGAGCAGCGGAAAAAATATTCCCACCTCTGGACTTTTCGATGCAACCTCCGGCTCAGGAGATTGTTGCGAAGGATTTGCACGATAGTACATGGACATTTAGGCATATTTATCGCGGACAACCAAAGAGGCACTTGTTGACTACCGGATGGAGTGTCTTTGTTAGCACGAAAAGGCTATTTGCTGGAGATTCTGTTCTTTTCATTAGAGATGAAAAACAGCAACTTCTTTTAGGTATAAAGCGCGCTAATAGGCAGCAGCCGGCACTCTCTTCATCGGTAATATCCAGTGACAGCATGCACATTGGCATTCTTGCTGCTGCAGCCCATGCTGCTTCAAATAACAGCCCTTTTACCATATTTTATAACCCAAGGGCAAGCCCCTCGGAATTTGTGATTCCGTTGGCCAAGTACAACAAGGCCATGTACACTCAAGTTTCTCTTGGTATGAGATTTAGAATGATGTTTGAGACTGAGGAGTCTGGAGTACGCAGATATATGGGTACAATCACCGGCGTTAGTGACTTGGATCCGGTCCGATGGAAAAACTCACAGTGGCGCAATCTTCAGGTTGGTTGGGATGAATCAACAGCTGGGGAGCGCCCAAGCAGAGTTTCGATCTGGGATGTTGAACCAAGAGCTATGCCCTGGCTTGGAGATGAACTTGGCATGAAGGATGCTTCAAGCTCAATCTTTCCTGGTTTGAGTTTAGTGCAATGGATGAGCATGCAGCAGCAGAACAATCAATTTGCCGCCACCCAATCCGGATTTTTCCCGCCATCTATGCTTTCATCCAATACCCTCCATGGCAACCTTAACAGTAATGATCAATCCAAGATATTGAACTTCCAAGCCCCGGTCCTCTCTGCACCAAATCTTCAATTCAACAAATCTAATCTACCCAACCAAGTCAACCAACTGCAGCAATCTATGACATCATGGCCCCAACAGCTGCAGCAGCCACAGCAGCAGCAGCAGCAGCAGAAGCTGCATTCATTGTTGCAATCGCCAGTAAACCAGCTTCAGCCACAACAGCAGCAGCAACAGAGGCAACAGCAGCTGCCAGAGCCACAAAACTTGTCGCAGTCACAGCAACAACAGCCCCAACTGCCTCAACAGAGAACACAGCAGCTGCAACAACCACAGCAGCAGCCGCCTCCACCACAGCAACACCAACCTCAACAGTCATGTCAACAGCCAATTATGAATAATCGGGTAGTTACTTCTAATCAATGTGTTCAAGTTCAACAACCGGTAGCCTATTCTCAGCTTCAGCAACAGCAGTTAGTCTCCGGAAGCATGCCGACACAACAAAGTATCCAACCTGCCAACAAGAATGCAATGCTAATGACATCCTTGCCATTAGACTCGCAATTTCAGCAATCGATAGATCAGCAAACTAGTCTCTTACAGAGGCAGCAGCAACAACCGACACAGTTGCAACAATCTCCATTGCAGTTTTTGCAACAAAGCACGTCGCAGAGGGCATTGCAGCAACTTCAAGGGACTCAAATGTCACAGCAAAACCCCTCAGAGCAACAGTTACAGTTACAGCTgctgcagaaactgcaacagcagcagcagcagcagcaacagcaacttatttcaacatctagtccacttttgcagtCACAGCTTCTGCAGCAAAAAAATACTCATCTGGCAAACCAGCAACTACCACAGCTGCCTCAATCGCAGCATCAACCTCAACAGCTCGGAAATAATTCATTCCCAATGGAGAAGCTTCTCAACAGCAACAGCTTCTCTTCTTCGTCTCTAATGCAATCGCAACAGCTTTCGGTGAACCAACCAACCCTGAATGCACAGAAATCAGTTATAACTAGTAGAGCTCCTTCTAGTCTTACCGATGTAGACGTGCCATCATGCTCGACTTCACCGTCTACTAATACCTGCCAGATATCTCCACCAAATCTCATGAAAAGAAATCAACAAGCACCAACCACATTCGGGGGGATTTCGGTAGTTGAGCCGACTAATAATTTGGTGCAAGAGCTTCATAATAAGTCTGATATGCCGATAAAACATGAATTATCCGGCATAAAAGGCCCTGACCAGCTTAAGTATAAAGGTACAATCAGTGATCAGCTGGAAGCTTCTTCGTCCGGAACATCTTACTGTATTGATCCGGGTAGCATCCACCAGAACTTCCAACTTCCAAACTTCTGCATGGATGGTGATGTTCAATCGCATCCTAGACAAAATCTACCATTTGCCTCCAATCTTGATGGACTAGCAGCGGATACCATGCTCTCAAGAGGTTATGACTCTCAAAAAGATCTTCAAAACTTGCTGGCTAACTATGGCGGTGCTCCAAGAGACATCGAAACAGAGCTGTCCACTGCCGCCATCAGCTCGCAGTCATTTGGGGTGCCGAACATGCCTTTCAAGCCTGGTTGCTCAAGTGATATTCCCATGAACGATGCTGGGGTTTTGAATAATGGCTTATGGGCTAACCAGACTCAGAGAATGCGAACATATACCAAGGTTCAAAAATGTGGTTCTGTTGGAAGATGTATCGACGTCACGCGATACAAAGGATATGATGAACTCCGCCACGATTTGGCTCGAATGTTCGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACCGAGTGGAAACTAGTATATGTGGATCATGAGAATGACATTCTTCTTGTTGGTGATGACCCGTGGGAAGAATTCGTAAGCTGTGTTCAGAGCATAAAGATATTGTCGTCCGCCGAGGTGCAACAAATGAGTTTGGATGGGGATCTAGGCCAAGTTCCAATCCCTAATCAAGCATGTAGTGGCACGGAAGGTGGCAATGCATGGAGGGGACAGTACGACGATAACTCTGCCGCCTCATTTAATCGATAA 3309 0.4515 MKAPSNGFLPNSGEGEKKTINSELWHACAGPLVSLPPIGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSKLICMLHNVVLHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGVSDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDVEPRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQQNNQFAATQSGFFPPSMLSSNTLHGNLNSNDQSKILNFQAPVLSAPNLQFNKSNLPNQVNQLQQSMTSWPQQLQQPQQQQQQQKLHSLLQSPVNQLQPQQQQQQRQQQLPEPQNLSQSQQQQPQLPQQRTQQLQQPQQQPPPPQQHQPQQSCQQPIMNNRVVTSNQCVQVQQPVAYSQLQQQQLVSGSMPTQQSIQPANKNAMLMTSLPLDSQFQQSIDQQTSLLQRQQQQPTQLQQSPLQFLQQSTSQRALQQLQGTQMSQQNPSEQQLQLQLLQKLQQQQQQQQQQLISTSSPLLQSQLLQQKNTHLANQQLPQLPQSQHQPQQLGNNSFPMEKLLNSNSFSSSSLMQSQQLSVNQPTLNAQKSVITSRAPSSLTDVDVPSCSTSPSTNTCQISPPNLMKRNQQAPTTFGGISVVEPTNNLVQELHNKSDMPIKHELSGIKGPDQLKYKGTISDQLEASSSGTSYCIDPGSIHQNFQLPNFCMDGDVQSHPRQNLPFASNLDGLAADTMLSRGYDSQKDLQNLLANYGGAPRDIETELSTAAISSQSFGVPNMPFKPGCSSDIPMNDAGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGQVPIPNQACSGTEGGNAWRGQYDDNSAASFNR 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02290 1102 SUPERFAMILY CAD & PB1 domains 989 1053 - -
Adu03g02290 1102 Gene3D - 123 227 IPR015300 -
Adu03g02290 1102 Pfam AUX/IAA family 972 1061 IPR033389 -
Adu03g02290 1102 SMART B3_2 126 228 IPR003340 GO:0003677
Adu03g02290 1102 MobiDBLite consensus disorder prediction 762 789 - -
Adu03g02290 1102 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Adu03g02290 1102 Gene3D - 289 359 - -
Adu03g02290 1102 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 356 IPR044835 GO:0003677|GO:0006355|GO:0009725
Adu03g02290 1102 CDD B3_DNA 125 217 IPR003340 GO:0003677
Adu03g02290 1102 Gene3D - 970 1064 - -
Adu03g02290 1102 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Adu03g02290 1102 MobiDBLite consensus disorder prediction 705 724 - -
Adu03g02290 1102 MobiDBLite consensus disorder prediction 1080 1102 - -
Adu03g02290 1102 MobiDBLite consensus disorder prediction 453 541 - -
Adu03g02290 1102 MobiDBLite consensus disorder prediction 608 631 - -
Adu03g02290 1102 MobiDBLite consensus disorder prediction 453 524 - -
Adu03g02290 1102 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 357 1089 IPR044835 GO:0003677|GO:0006355|GO:0009725
Adu03g02290 1102 PANTHER AUXIN RESPONSE FACTOR 19 357 1089 - -
Adu03g02290 1102 PANTHER AUXIN RESPONSE FACTOR 19 1 356 - -
Adu03g02290 1102 ProSiteProfiles PB1 domain profile. 975 1068 IPR000270 GO:0005515
Adu03g02290 1102 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Adu03g02290 1102 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02290 Adu-Chr3 50381763 50388562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02290 1 463 B3 DNA Binding Superfamily AT1G19220 75.703 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Adu03g02290 AUX_IAA 2.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02290 K14486 - gmx:100804628 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g02290 03 50381763 50388562 Adu03g02290 03 50381763 50388562 ECH