Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02214 ATGGAAACTATAATCCCAGATTGCGAGATCATTGGGAATCCAAAACCGTTTGGGGAATCTAATTTACCAACTCAGAAAACATCACCTGATAAAGTTGTGCAGACATCATCCAGGGGTCATAATAATAATCAACAACAGACTTCTCAAACAGGTCATGCTGCACAGAGTTTCCGGCCAATAGTTCAACCTGCATATCAGCCACCTCCAGTTTACAAAAACCGTGGTGCTATTGTGAAAAATGAGGCACCAGCACGCATCATTCCCATAGCAGCTTTAAATCCTTACCAAGGTCGTTGGGCAATCAAGGCAAGGGTAACCGCAAAAGGGGATCTGCGCCGCTACAATAATGCTCGTGGAGATGGGAAAGTTTTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACCTGCTTTAATGCTGTTGTAGATCGTTTCTACAATGCAATTCAAGTTGGTAAAGTTTACACAATATCCAAAGGTAGCTTGAAACCTGCGCAGAAAAATTTTAACCATTTGAAGAATGATTGGGAAATTGTATTGGATTCAAATTCAAATGTTGAACTTTGTCCGGATGAAGATGATTCTATTCCTAAACAGCAATTCTCCTTCAGGCCAATAATTGACCTTGAGAATGTTGACAATAATGGCATTCTTGATGTTATTGGGGTTGTGATATCTGTGAATCCTTCGGTTCCCATCTTGAGGAAGAATGGGATGGAAACTCAGAGAAGAATTTTGAATATAAAGGACTCCTCAGGCAGGAGTGTCGAGTTAACCCTTTGGGGCGAATTCTGCAACAGGGAAGGACAAAAGCTGCAAGAGATGGCTGATGCTGGGTCCTTCCCCATTGTGGCAGTCAAGGCAGGGAAGGTTAACGACTTCAGTGGAAAATCTATTGGTACTATTTCTACTACACAGCTTTCCATAAACCCGGACTTGCCTGAGGCTCATACCTTGAGAGAATGGTTTGATAGAGTGGGAAAGGATTCAGTTTCTCGATCCATTTCTAAGGATGTTTTGCCAGGAGGACCAAAGAATGAGATACGTAAAACTGTGTCTCAGATCAAGGATGAAGGCCTGGGGCGGTCTGATAAGCCAGACTGGATAACAGTGAGGGCAACCGTATCATTCATCAAGACAGATACGTTTTGTTACACAGCTTGCCCTCTGATGGTTGGAGACCGACAGTGCAGTAAGAAAGTGACCAGGGTAGGAGACGCAAGATGGCAGTGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGGTACCTTCTTCAAGCTCAAATTGTGGATCATACAGGAATAACTTGGGTAACTGCTTTTCAGGAAGCAGGGGAAGAGATTATGGAGTACCCAGCGAAAGAGCTGTACTTGTTGAAGTATGAAGAGCAGGATGATGACAAGTTCGGGAAAATAATCAAGAGTAGCCTCTTCAACCATTTTGTGTTTAGGCTTAAAATCAAAGAGGAATTGTATGGTGATGAACAGAGGGTTAAGGTAACAGTAGTCAAGGCAGATAAAGTTAATTACTCTTCAGAGAGTAGATACATGCTTGAATCGATTTCCAAGTTTTGTAGGCAGTAA 1599 0.4246 METIIPDCEIIGNPKPFGESNLPTQKTSPDKVVQTSSRGHNNNQQQTSQTGHAAQSFRPIVQPAYQPPPVYKNRGAIVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNAIQVGKVYTISKGSLKPAQKNFNHLKNDWEIVLDSNSNVELCPDEDDSIPKQQFSFRPIIDLENVDNNGILDVIGVVISVNPSVPILRKNGMETQRRILNIKDSSGRSVELTLWGEFCNREGQKLQEMADAGSFPIVAVKAGKVNDFSGKSIGTISTTQLSINPDLPEAHTLREWFDRVGKDSVSRSISKDVLPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATVSFIKTDTFCYTACPLMVGDRQCSKKVTRVGDARWQCDRCNQEFEECDYRYLLQAQIVDHTGITWVTAFQEAGEEIMEYPAKELYLLKYEEQDDDKFGKIIKSSLFNHFVFRLKIKEELYGDEQRVKVTVVKADKVNYSSESRYMLESISKFCRQ 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02214 532 SUPERFAMILY Nucleic acid-binding proteins 85 199 IPR012340 -
Adu03g02214 532 Gene3D - 198 337 IPR012340 -
Adu03g02214 532 Gene3D - 338 530 IPR012340 -
Adu03g02214 532 PANTHER REPLICATION FACTOR A 1, RFA1 68 526 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu03g02214 532 SUPERFAMILY Nucleic acid-binding proteins 203 329 IPR012340 -
Adu03g02214 532 Pfam OB-fold nucleic acid binding domain 100 172 IPR004365 GO:0003676
Adu03g02214 532 Pfam Replication protein A OB domain 209 313 IPR031657 -
Adu03g02214 532 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 10 528 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu03g02214 532 Pfam Replication factor-A C terminal domain 371 521 IPR013955 -
Adu03g02214 532 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 68 526 - -
Adu03g02214 532 Gene3D - 84 195 IPR012340 -
Adu03g02214 532 CDD RPA1_DBD_C 355 528 IPR013955 -
Adu03g02214 532 CDD RPA1_DBD_B 220 327 - -
Adu03g02214 532 SUPERFAMILY Nucleic acid-binding proteins 352 529 IPR012340 -
Adu03g02214 532 CDD RPA1_DBD_A 88 191 - -
Adu03g02214 532 MobiDBLite consensus disorder prediction 1 54 - -
Adu03g02214 532 MobiDBLite consensus disorder prediction 18 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02214 Adu-Chr3 44538498 44541309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02214 1 528 Core DNA Replication Machinery Family AT2G06510 68.978 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02214 K07466 - gmx:100792409 889.026