Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02207 ATGGACGGTGGCGGACACTACAACCCTCGCACCGTTGAGGAAGTTTTCCGCGACTTCAAGGGTCGCAGAGCTGCTATGATCAAAGCCCTCACCACTGATGTTGAGGAGTTTTACCGGCAGTGTGATCCAGATAAGGAGAACCTCTGTCTGTATGGATACCCCACTGAACAGTGGGAAGTTAATTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCCGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAGAAGGACTGGCTAACTTTAGTTGCAGTTCACAGTGATGCGTGGCTAATTGCAGTGGCTTTCTACTTTGGAGCAAGATTTGGTTTTGACAGAGCTGACAGGAAACGTCTGTTCACTATGATTAATGATCTGCCAACAATTTTTGAGGTTGTGACTGGAACTGCAAAGAAACAGTCGAAGGAAAAGTCATCAGTTTCAAACCACACCAACAGCAAATCAAAATCTAGTTCAAAAGGGCGAGGATCTGAATCGGTTAAGCAAACAAAGCAAGCAAAGGAAGAGGATGAGGGTGCAGAGGAAGATGAGGAGGAGCACGGGGAGACCCTGTGTGGTGCATGTGGGGAGCTCTATGCAGCTGATGAGTTTTGGATTTGCTGCGACATATGCGAGAGGTGGTTCCATGGCAAGTGCGTGAAGATCACGCCTGCTCGGGCTGAGCACATTAAACAGTACAAGTGCCCCACTTGCAGCAACAAGAGAGCACGGTCTTGA 750 0.4853 MDGGGHYNPRTVEEVFRDFKGRRAAMIKALTTDVEEFYRQCDPDKENLCLYGYPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLTLVAVHSDAWLIAVAFYFGARFGFDRADRKRLFTMINDLPTIFEVVTGTAKKQSKEKSSVSNHTNSKSKSSSKGRGSESVKQTKQAKEEDEGAEEDEEEHGETLCGACGELYAADEFWICCDICERWFHGKCVKITPARAEHIKQYKCPTCSNKRARS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02207 249 MobiDBLite consensus disorder prediction 145 170 - -
Adu03g02207 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Adu03g02207 249 Pfam PHD-finger 196 245 IPR019787 -
Adu03g02207 249 SUPERFAMILY FYVE/PHD zinc finger 185 246 IPR011011 -
Adu03g02207 249 PANTHER CPG BINDING PROTEIN 3 248 IPR045104 GO:0006355|GO:0042393
Adu03g02207 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Adu03g02207 249 MobiDBLite consensus disorder prediction 145 189 - -
Adu03g02207 249 SMART PHD_3 195 243 IPR001965 -
Adu03g02207 249 CDD PHD_AL_plant 195 245 IPR044104 -
Adu03g02207 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Adu03g02207 249 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Adu03g02207 249 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02207 Adu-Chr3 43951514 43954407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02207 1 249 Alfin-like Transcription Factor Family AT3G42790 74.603 2.62e-123 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Adu03g02207 Alfin 1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02207 - - jre:109009410 428.328