Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02178 ATGGCATCATCAAGCTCTTACAACTCTCCATGTGCTGCTTGCAAATTCTTGAGGAGGAAGTGTTTGCCAGGATGCATCTTTGCACCTTACTTCCCACCTGAAGAACCCCAAAAATTCGCCAATGTTCACAAGATCTTCGGCGCGAGCAATGTCACCAAGCTTCTCAACGAGCTTCTGCCTCAGCAGAGGGAAGACGCAGTGAATTCCCTCGCGTACGAGGCAGAAGCTCGTGTGAGAGACCCTGTTTACGGCTGCGTTGGCGCCATCTCTTACCTTCAGAGACAAGTCCAGAGACTTCAGAAGGAACTTGATGCTGCCAACGCGGATCTTCTTCGCTACGCTTGCAACGAAATCCCTCCTCCACACCATCAT 372 0.5108 MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVQRLQKELDAANADLLRYACNEIPPPHHH 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02178 124 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Adu03g02178 124 Coils Coil 89 116 - -
Adu03g02178 124 PANTHER ELONGATED PETIOLULE 1 1 120 - -
Adu03g02178 124 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Adu03g02178 124 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02178 Adu-Chr3 42399268 42399647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02178 1 114 AS2 family AT5G63090 93.043 1.49e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Adu03g02178 LOB 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02178 - - gmx:100799774 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g02178 03 42399268 42399647 Adu03g02178 03 42399268 42399647 ECH