Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02172 ATGGGAAGAGGCAGAGGAGTTGCGGCTCTGAAACCCACGGCGGCGGAGGTAAACGAATCAAGGCCGATGCTAGTATTGAAGGAAGTTAGATACCGTGGCGCGAGGAAGAGACCGTGGGGAAGATTCGCCGCTGAAATCAAAGACCTGTTGAAGAAAGCAAGGGTTTGGCTCGAAACCTTCGATTCTGCCGAGGACTACCTGCGCTTACGATGCCGCCGCAAGAACACTCTAGGGACCAAAAGCCAAGACCAATTTTTCTCGCCGCTCAGGATCCAGCCCTCGATGTAG 288 0.5417 MGRGRGVAALKPTAAEVNESRPMLVLKEVRYRGARKRPWGRFAAEIKDLLKKARVWLETFDSAEDYLRLRCRRKNTLGTKSQDQFFSPLRIQPSM 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02172 95 ProSiteProfiles AP2/ERF domain profile. 30 64 IPR001471 GO:0003700|GO:0006355
Adu03g02172 95 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 68 - -
Adu03g02172 95 Gene3D AP2/ERF domain 29 74 IPR036955 GO:0003700|GO:0006355
Adu03g02172 95 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Adu03g02172 95 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Adu03g02172 95 Pfam AP2 domain 30 64 IPR001471 GO:0003700|GO:0006355
Adu03g02172 95 SMART rav1_2 30 86 IPR001471 GO:0003700|GO:0006355
Adu03g02172 95 SUPERFAMILY DNA-binding domain 30 66 IPR016177 GO:0003677
Adu03g02172 95 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02172 Adu-Chr3 42281943 42282230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02172 1 85 AP2-EREBP Transcription Factor Family AT1G50640 53.409 2.91e-19 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu03g02172 AP2 2.3e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02172 K09286 - adu:110278551 193.356