Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02160 ATGCCGCAAGATTCCTCCGATCAAGACCTCGACGACGCCGATTCCGAGTTCGTTGAGGTTGACCCAACCGGTCGCTATGGTCGGTACAAGGAAGTTTTAGGGAAGGGAGCTTTCAAGAAAGTATATCGAGCATTTGATGAGTTGGAAGGAATTGAAGTAGCTTGGAATCAGATTAAGGTGGCGGATCTGCTGCGTAACTCGGAAGATTTGGAGAGACTTTATTCTGAGGTCCATCTGCTCAAGACGTTGAAGCACAAGAATATAATTAAGTTCTACAATTCGTGGGTTGACACCAAGAATGAGAACATCAACTTCATTACCGAGATTTTCACCTCGGGGACATTACGCCAATATCGTAAGAAACACAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTAAGCAGATTTTGGAGGGCCTTTTATATCTTCACAGTCATAATCCTCCAGTTATACATCGAGACCTTAAGTGTGACAACATTTTTGTCAACGGGAATCAAGGGGAGGTAAAAATTGGAGATTTAGGGTTGGCAGCTATTCTTCAACAGGCCCAAGCAGCTCACAGTGTCATAGGTACCCCGGAGTTCATGGCCCCAGAACTTTATGAAGAAGAGTACAACGAGCTTGTTGATATCTACGCTTTTGGAATGTGCTTGCTAGAGTTGGTAACCTTTGAGTATCCATACGTTGAATGTTCCAATGCTGCTCAAATATACAAGAAAGTGACATCGGGAATAAAGCCAGCATCATTGGCAAAAGTGGCAGATCAAGAAGTTAAGGCATTCATTGAAAAGTGTATCGCTAATGTTTCAGAACGGTTGCCTGCAAAGGCTCTCTTGATGGATCCCTTCCTTCAGTCTGACTCTGATAGTGAAAGTGTAGGTCGTTCTTCAAGGTCTGGAACCCATCATTCAGATGCAGGAAATAGTTCTAATAATCAAGCAATTGGAAAAAGTGTTCAGGATGTTTCTGGTGATTCAAATAGGGAATTCACAGTGGAAGGTCAGAGGAAAGATATTGATACAATATTTTTAAAACTGCGAATAGCAGACTCCTCAGGTCATGTTCGGAATATCCACTTCCCTTTCGATATTGGAGCGGACACTGCAATCTCTGTTGCTAGTGAAATGGTCGAGGAGTTGGAACTTACTGATCAAGATGTCACAACTATTGCTGAGACAATTGACTCTGAAATTCGATCTCTCATTCCTGGTTGGAACCCCAGTGAAACTCCTGCTACTAATGTTCCTGAAGATTCAGCAGTTTCAGATGGCTGTACCTCTGCTGAAACTAGGAGTGTGTCTTCTCCTACAGAAAATGATTCAACCACTCCTTCTAGCAACCTTGCATTAGAAATACTACGTTCAGGTCGTAAGTACTGGTCAGACTCACCTAAGGGAGTTTGTGGAAACCCTTTATCTAGGCATGGTTCTTCAAACTTGTCCCATGTAGGTGATGCAAATGCTGAGAAAGGAAGCTTGACTGCAAATGGTGCTATTTCAGATGAACTTGAGCCTGACCAGGTTACCTGTGTCGGTGCTTACTGTGCAGAGAAGGAATGTGATAGTACTGGTGATTCCCCCTCCACCGAGAGAACTATTACCTCTGGATATTTGGAAGAGACCAGTGAAGCATCATCTCTGGAAAAAATACCTGAAAGTTTGGAAGTTTCTGAAATAGATGCCAGTAAAATAGCACTGCAACTTGAGAGTTTGTTGACAAATCAAAAAGAGGAGCTGGAAGAACTAAAGAGGAAGCAAAAATTAGCTGTCTCTAATCTTTTGAAGGAACTTTCACCAGAAATTTGTAAGAAGGGCACTTCATGTTACTTCGAACTGGATTGCATAGTGCTTACTCTTTTGAAGTTCATGATAACATCTCCAAACACCAAACTCCTCTTCCTCTCCCTCCCTTCATTCAAAACCCTCACTCACTCTNNNAACCCCTCCACCATCCTCCACCTCACTCCTTCTTCCACTTCCACCTCAACTCCCACCACCACCCGCCGCAAAACCTTCACCGTACGCGCCGCGCGTGGAAAATTCGAGCGTAAGAAGCCACACGTCAACATCGGAACCATCGGCCACGTCGACCACGGCAAAACCACCCTCACCGCCGCCCTTACCATGGCTCTCGCCGCCCTCGGAAACAGCGCTCCCAAGAAGTACGACGAGATCGACGCCGCGCCGGAGGAAAGGGCGCGTGGAATCACCATCAACACTGCGACGGTGGAGTACGAGACGGAGAACCGCCACTATGCACACGTGGACTGCCCTGGACACGCTGATTACGTCAAGAACATGATCACCGGAGCTGCGCAGATGGACGGCGCTATATTGGTGGTTTCCGGTGCCGACGGACCCATGCCGCAGACTAAGGAGCACATCCTTCTTGCTAAGCAAGTTGGTGTTCCCAACATGGTTGTCTTTCTCAACAAGCAAGACCAGGTGGATGATGAGGAGCTTTTGCAGCTTGTGGAGCTTGAGGTTCGTGAGCTTCTGTCCTCATATGAGTTCCCTGGTGATGACATTCCTATTATTTCCGGTTCTGCTCTGTTGGCCTTGGAAGCTTTGATGGCAAATCCAGCAATCAAGCGTGGTGATAATGAGTGGGTGGATAAGATTTATCAACTTATGGATTCTGTGGATAGTTACATTCCCATCCCTCAGCGCCAAACTGATCTACCCTTCTTACTTGCGGTGGAAGATGTGTTTTCAATCACTGGTCGTGGAACGGTGGCCACAGGGCGTGTTGAGAGGGGAACCATTAAGGTTGGAGATACGGTTGACCTTGTTGGTATCAGGGAAACTAGGAACACTACTGTGACTGGTGTGGAAATGTTCCAGAAGATTCTCGATGAGGCCATGGCTGGGGACAACGTGGGATTGTTGCTTAGGGGTATTCAGAAGGTCGATATTCAGAGAGGGATGGTTTTGGCCAAGCCTGGAACCATCACACCGCACACAAAGTTCAGCGCAATCGTCTATGTTTTGAAGAAGGAAGAAGGAGGGAGGCACTCACCTTTCTTTGCCGGGTACAGGCCTCAGTTCTACATGAGGACCACCGATGTCACTGGCAAGGTTACTCAAATCATGAATGACAAGGATGAGGAATCAAAGATGGTTATGCCTGGTGACCGTGTTAAGATGGTGGTTGAACTTATCCAGCCCGTGGCTTGTGAACAGGGAATGAGGTTCGCTATTAGAGAAGGAGGGAAGACCGTCGGAGCCGGTGTTATCCAATCTATAATTGAGTAA 3258 0.4635 MPQDSSDQDLDDADSEFVEVDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQIKVADLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSKQILEGLLYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQAQAAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECSNAAQIYKKVTSGIKPASLAKVADQEVKAFIEKCIANVSERLPAKALLMDPFLQSDSDSESVGRSSRSGTHHSDAGNSSNNQAIGKSVQDVSGDSNREFTVEGQRKDIDTIFLKLRIADSSGHVRNIHFPFDIGADTAISVASEMVEELELTDQDVTTIAETIDSEIRSLIPGWNPSETPATNVPEDSAVSDGCTSAETRSVSSPTENDSTTPSSNLALEILRSGRKYWSDSPKGVCGNPLSRHGSSNLSHVGDANAEKGSLTANGAISDELEPDQVTCVGAYCAEKECDSTGDSPSTERTITSGYLEETSEASSLEKIPESLEVSEIDASKIALQLESLLTNQKEELEELKRKQKLAVSNLLKELSPEICKKGTSCYFELDCIVLTLLKFMITSPNTKLLFLSLPSFKTLTHSXNPSTILHLTPSSTSTSTPTTTRRKTFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIISGSALLALEALMANPAIKRGDNEWVDKIYQLMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGDTVDLVGIRETRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTQIMNDKDEESKMVMPGDRVKMVVELIQPVACEQGMRFAIREGGKTVGAGVIQSIIE 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02160 1085 Gene3D Transferase(Phosphotransferase) domain 1 110 293 - -
Adu03g02160 1085 Gene3D Translation factors 1024 1084 - -
Adu03g02160 1085 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Adu03g02160 1085 SUPERFAMILY Protein kinase-like (PK-like) 29 286 IPR011009 -
Adu03g02160 1085 PANTHER ELONGATION FACTOR TU 644 1085 - -
Adu03g02160 1085 MobiDBLite consensus disorder prediction 290 330 - -
Adu03g02160 1085 MobiDBLite consensus disorder prediction 407 449 - -
Adu03g02160 1085 Gene3D Translation factors 892 1020 - -
Adu03g02160 1085 Pfam Elongation factor Tu C-terminal domain 984 1083 IPR004160 -
Adu03g02160 1085 CDD EFTU_III 986 1080 - -
Adu03g02160 1085 Gene3D - 341 427 - -
Adu03g02160 1085 Pfam Elongation factor Tu GTP binding domain 686 887 IPR000795 GO:0003924|GO:0005525
Adu03g02160 1085 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu03g02160 1085 TIGRFAM EF-Tu: translation elongation factor Tu 678 1085 IPR004541 GO:0003746|GO:0005525|GO:0006414
Adu03g02160 1085 Coils Coil 566 597 - -
Adu03g02160 1085 SUPERFAMILY Translation proteins 891 987 IPR009000 -
Adu03g02160 1085 CDD STKc_WNK 25 285 - -
Adu03g02160 1085 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 345 399 IPR024678 GO:0004674|GO:0005524
Adu03g02160 1085 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Adu03g02160 1085 Pfam Elongation factor Tu domain 2 911 979 IPR004161 GO:0005525
Adu03g02160 1085 Gene3D - 678 889 IPR027417 -
Adu03g02160 1085 CDD EFTU_II 897 983 IPR033720 -
Adu03g02160 1085 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 984 1084 IPR009001 -
Adu03g02160 1085 TIGRFAM small_GTP: small GTP-binding protein domain 689 821 IPR005225 GO:0005525
Adu03g02160 1085 PRINTS GTP-binding elongation factor signature 770 781 IPR000795 GO:0003924|GO:0005525
Adu03g02160 1085 PRINTS GTP-binding elongation factor signature 754 764 IPR000795 GO:0003924|GO:0005525
Adu03g02160 1085 PRINTS GTP-binding elongation factor signature 690 703 IPR000795 GO:0003924|GO:0005525
Adu03g02160 1085 PRINTS GTP-binding elongation factor signature 807 816 IPR000795 GO:0003924|GO:0005525
Adu03g02160 1085 PRINTS GTP-binding elongation factor signature 734 742 IPR000795 GO:0003924|GO:0005525
Adu03g02160 1085 PANTHER ELONGATION FACTOR TU-RELATED 644 1085 - -
Adu03g02160 1085 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu03g02160 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 684 912 IPR027417 -
Adu03g02160 1085 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 686 890 IPR000795 GO:0003924|GO:0005525
Adu03g02160 1085 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu03g02160 1085 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 727 742 IPR031157 -
Adu03g02160 1085 MobiDBLite consensus disorder prediction 402 449 - -
Adu03g02160 1085 CDD EF_Tu 687 889 IPR041709 -
Adu03g02160 1085 Hamap Elongation factor Tu [tuf]. 677 1085 IPR004541 GO:0003746|GO:0005525|GO:0006414
Adu03g02160 1085 MobiDBLite consensus disorder prediction 290 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02160 Adu-Chr3 42153481 42160465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02160 15 406 MAP Kinase Kinase Kinase AT3G22420 54.795 2.56e-163 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Adu03g02160 Pkinase 4.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02160 K02358 - gmx:100793431 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g02160 03 42153481 42160465 Adu03g02160 03 42153481 42160465 ECH
Adu01g01742 01 62432948 62435039 Adu03g02160 03 42153481 42160465 PCT