Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02126 ATGTCTATCATCACTGGCTTCAAATCCCTAACTACCATGGCAGAATCATGCCTTCTCTCTCCTCCTTCCTCTCTCTTCCATTCCAAACACATCACCCATTCAAATTCCAAACCCCACCACCACACTCTCTTCAAACTCGCTTCTCCATTCCCTTCCCTCTCTCTTTCTCTCACCGCAAGGCGCCATCATCACGTGCTCACTCACGTGGCCCAAACCTCCGACTGGGCCCAGCAAGAGGAAGACAACACTTTCACCTTGGAACAGCAAGAAGCTGAAGAACCTGCACTTTCCGATTGGGAACCCAGCGCTGAAATCGTAGGCGAAGCTGAAGTTGCTGAAGCCGAAGACGGAGACGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGGAGGGGATTTTGTTGAGCCACCAGAGGAGGCGAAAATCTTCGTTGGAAACTTGCCTTATGACGTTGATAGCCAGAAACTCGCCATGCTTTTCGAGCAAGCTGGAACCGTTGAAATTGCCGAGGTTATTTACAACAGGGACACTGACCAAAGTCGCGGGTTTGGCTTCGTGACAATGAGTACTGTCGAGGAAGCTGAGGCTGCTGTGGATAAGTTCAACCGCTATGATTTAGGTGGAAGACTGTTGACTGTTAACAAGGCTTCTCCAAGAGGAGAGCGACCTGAACGCCCACCCCGTTCATTCGAACAGGCTTTTAGAATCTATGTTGGTAACTTGCCTTGGGATGTTGACAATGGTCGCCTGGAGCAGATTTTCAGCGAACACGGTAAGGTTGTGAATGCTCGCGTAGTGTATGACAGAGAAACTGGACGATCACGCGGCTTTGGTTTTGTCACAATGACTGACGAGAGTGAAATGAACGATGCAATTGCTGCTCTTGATGGCCAGAGTTTGGATGGAAGGGCAATAAGAGTGAATGTTGCTGAGGACAGACCCAGACGCTCTTTTTGA 957 0.4911 MSIITGFKSLTTMAESCLLSPPSSLFHSKHITHSNSKPHHHTLFKLASPFPSLSLSLTARRHHHVLTHVAQTSDWAQQEEDNTFTLEQQEAEEPALSDWEPSAEIVGEAEVAEAEDGDEEEEEEEGEEEGGDFVEPPEEAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEAAVDKFNRYDLGGRLLTVNKASPRGERPERPPRSFEQAFRIYVGNLPWDVDNGRLEQIFSEHGKVVNARVVYDRETGRSRGFGFVTMTDESEMNDAIAALDGQSLDGRAIRVNVAEDRPRRSF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02126 318 MobiDBLite consensus disorder prediction 110 137 - -
Adu03g02126 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 312 IPR000504 GO:0003723
Adu03g02126 318 SUPERFAMILY RNA-binding domain, RBD 136 229 IPR035979 GO:0003676
Adu03g02126 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 306 IPR000504 GO:0003723
Adu03g02126 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 211 IPR000504 GO:0003723
Adu03g02126 318 SMART rrm1_1 141 214 IPR000504 GO:0003723
Adu03g02126 318 SMART rrm1_1 235 308 IPR000504 GO:0003723
Adu03g02126 318 SUPERFAMILY RNA-binding domain, RBD 227 316 IPR035979 GO:0003676
Adu03g02126 318 PANTHER OS02G0815200 PROTEIN 5 317 - -
Adu03g02126 318 CDD RRM_HP0827_like 141 218 - -
Adu03g02126 318 Gene3D - 68 222 IPR012677 -
Adu03g02126 318 Gene3D - 223 317 IPR012677 -
Adu03g02126 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Adu03g02126 318 PANTHER RIBONUCLEOPROTEIN 5 317 - -
Adu03g02126 318 CDD RRM_HP0827_like 235 311 - -
Adu03g02126 318 MobiDBLite consensus disorder prediction 110 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02126 Adu-Chr3 41869911 41872479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02126 138 316 Eukaryotic Initiation Factors Gene Family AT3G16380 36.458 1.03e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02126 - - adu:107478884 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01617 01 50237198 50240920 Adu03g02126 03 41869911 41872479 ECH
Adu03g02126 03 41869911 41872479 Adu03g02126 03 41869911 41872479 ECH
Adu01g01617 01 50237198 50240920 Adu03g02126 03 41869911 41872479 PCT