Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02117 ATGATGATATCAAGAAGCATTCTATTCTCTTTGGTTTTCTTGGTTTTCTCTTTTCTCATCCCTACCTTCATTTCCTCTTCCCCTGTCCAAGACCCTGAATTGGTAGTTCAAGAGGTGAATAGGCAAATCAATGCCTCCATTGCTAGGAGGAGCTTGTTAGCTAGTGATAGGAGAAACTTAGGGTACCTTTCATGTGGAAGTGGCAACCCCATTGATGATTGTTGGAGGTGTGATCCTAATTGGGAACAGAACAGACAGAAGCTAGCCGACTGCGCAATTGGGTTCGGAAAGAACGCAATTGGTGGTCGAGATGGTAAGATTTACGTGGTAGATGATTCTGGAAATGATGATCCAGTAAACCCTAAATCCGGAACCCTACGCCATGCAGTGATTCAGGATGAGCCGTTATGGATTATATTCGCTAAGGATATGGTAATCACACTGAAAGAAGAATTAATTATGAATTCTTACAAGACAATTGATGGAAGAGGAGCTAGTGTACACATTGCTAATGGTCCATGCATAACTATACAATATGTGACAAATGTGATTATACATGGAATTAACATACATGATTGTAAGCAAGGGGGGAATGCTATGGTGCGTGACTCTCCTAGGCACTACGGGTGGAGGACCGTATCGGACGGCGATGGCGTGTCGATCTTCGGTGGGGCCCACATTTGGGTGGACCATTGTTCATTGTCCAATTGCAATGATGGGTTGATTGATGCAATTCATGGGTCCACAGCAATCACAATATCTAACAATTACATGACACACCATGATAAGGTTATGTTGCTTGGTCATAGTGATGAATATACTCAAGACAAGAACATGCAAGTCACTATTGCTTTCAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGTAGGCTTGGATACTTCCACGTGGTGAATAATGACTATACCCATTGGGAGATGTATGCTATTGGAGGAAGTGCTAACCCTACCATTAATAGCCAAGGAAATAGATTTGTTGCACCCAATGATAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCAGCAGAGAGTGAATGGAAGAATTGGAATTGGAGATCAGAAGGGGACATGCTTGTTAATGGTGCATTCTTCACAGCTTCTGGTGCTGGTGCTTCTTCAAGCTATGCTAGGGCTTCTAGCCTCAGTGCTAGACCCTCTTCTCTTGTTGCTTCTATTACTACTTCTTCTGGTGCCCTTCTTTGCAAGAAAGGTTCTCCATGCTGA 1254 0.4314 MMISRSILFSLVFLVFSFLIPTFISSSPVQDPELVVQEVNRQINASIARRSLLASDRRNLGYLSCGSGNPIDDCWRCDPNWEQNRQKLADCAIGFGKNAIGGRDGKIYVVDDSGNDDPVNPKSGTLRHAVIQDEPLWIIFAKDMVITLKEELIMNSYKTIDGRGASVHIANGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGAHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDEYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAAESEWKNWNWRSEGDMLVNGAFFTASGAGASSSYARASSLSARPSSLVASITTSSGALLCKKGSPC 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02117 417 PANTHER PECTATE LYASE 7 414 - -
Adu03g02117 417 SUPERFAMILY Pectin lyase-like 69 408 IPR011050 -
Adu03g02117 417 Pfam Pectate lyase 150 334 IPR002022 -
Adu03g02117 417 SMART amb_all 143 340 IPR002022 -
Adu03g02117 417 Gene3D - 68 410 IPR012334 -
Adu03g02117 417 PANTHER PECTATE LYASE 18-RELATED 7 414 IPR045032 GO:0030570
Adu03g02117 417 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Adu03g02117 417 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Adu03g02117 417 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Adu03g02117 417 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Adu03g02117 417 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Adu03g02117 417 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Adu03g02117 417 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Adu03g02117 417 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02117 Adu-Chr3 41772826 41776864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02117 1 417 Polysaccharide Lyase AT5G63180 77.327 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02117 K01728 - gmx:100787082 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g02117 03 41772826 41776864 Adu03g02117 03 41772826 41776864 ECH
Adu01g01630 01 51205466 51207773 Adu03g02117 03 41772826 41776864 ECH
Adu10g00771 10 10069106 10072843 Adu03g02117 03 41772826 41776864 ECH
Adu03g02117 03 41772826 41776864 Adu01g01630 01 51205466 51207773 ECH
Adu01g01630 01 51205466 51207773 Adu03g02117 03 41772826 41776864 PCT