Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02111 ATGGAACCTTCTGAATCAGAATCAGTTGGTTCCTCCACCACAACCACCACCAAAGACCCACAATTGGGTTCTCAGAGTGAACCTTCTTCTCCTTTTCCCAATCATCATCACGATCCTCAACAATCAGAGCCAGATCTCAGTCAAAATTTGGGGTTGCAGGATGAAACTCGTGATGAACTTGGTGCAGAGTTCCACAAGAAGTTGGATTTGAAGGATGAGGATGAAAGGGTAGCTGAAAATGAGAAGAAAGATTCGAACTTTGTAGCTGGTAGTGGAGAATATGGTGGTGAGGAATTGGGTGGTGAAGGTGGTTGTGCCCCGGAAACAGGTGAAGCACAGGGGAGTGATGATAATGATGGTTGGGATGATGATGAGGGTTATGGCTGGAATGAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGTGGTAGAGTTCAGCAGCAATATCCACTGAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACCAGGCTGTTAAAGAGAAGGTTGGGGGAGAAAGAGAAGAACCGGCTGAAAAATCGGGCCAGATAGAATGCAAGTATTATTTAAGGTCGGGAGGATGTAAGTTTGGAAAAGCTTGTAAATTTAACCACACAAGAGGAAAGCCTTCAGCTGCGCCACTTTTGGAGCTTAACTTTCTTGGCTTGCCTATACGATTGGGAGAGAAACAATGTCCCTATTACATGCGCACAGGCTCCTGTAAGTTTGGAGCAAATTGCAAGTTTAATCATCCTGATCCTACTTCTGGTGGTAGAGTTGGGGATTCTGTTTCAGGATTTGGTAATGGTAATTATGTACCCCTACAAGGCGCATCACAACCATCTGGTCCCTCGTGGTCATCTTCAAAAACATTAAATGATACTGCTCCTTTTGTGCCAATGATGCTTTCGCCTAGTCAAGCGGTTTCTCCCCGAAGTCCTGAATGGAACGGATACCAGGCACCTGTCTATTTATCCGAGAGGAGTATGCACCCACCATCGGCATATGTCATGAACAACCCAACAATCGAAACACCTATGTACATGCACCAACCAAAGCAGACGCCAATTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTACTTCTTAAAAACTGGAGATTGCAAGTTCAAATCCAATTGTAAATTCCATCATCCAAAGAATCGGGTTGCAAGAATACCTCCGTGCAACCTCAGTGACAAGGGCCTGCCTCTGAGACCTGATCAGAATGTATGCTCCCATTACAGCCGCTACGGGATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGGTAATAAACCCATCTCCCCCAAGTAGTCCTGGACTTGATCAGCAAACTTCTTATACAGACACGCCTAATGAGATGACTACGATGGAGGGAAATGGAGATGCCAATGATGAGGCAATTCGTCAGCCTGTTTAG 1593 0.447 MEPSESESVGSSTTTTTKDPQLGSQSEPSSPFPNHHHDPQQSEPDLSQNLGLQDETRDELGAEFHKKLDLKDEDERVAENEKKDSNFVAGSGEYGGEELGGEGGCAPETGEAQGSDDNDGWDDDEGYGWNENVKESEVDKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSSGRVQQQYPLRPDAEDCAFYLKTGTCKFGFNCKFNHPLGRRKNQAVKEKVGGEREEPAEKSGQIECKYYLRSGGCKFGKACKFNHTRGKPSAAPLLELNFLGLPIRLGEKQCPYYMRTGSCKFGANCKFNHPDPTSGGRVGDSVSGFGNGNYVPLQGASQPSGPSWSSSKTLNDTAPFVPMMLSPSQAVSPRSPEWNGYQAPVYLSERSMHPPSAYVMNNPTIETPMYMHQPKQTPIEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRVARIPPCNLSDKGLPLRPDQNVCSHYSRYGICKFGPACKFDHPVINPSPPSSPGLDQQTSYTDTPNEMTTMEGNGDANDEAIRQPV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02111 530 SUPERFAMILY CCCH zinc finger 420 444 IPR036855 GO:0046872
Adu03g02111 530 MobiDBLite consensus disorder prediction 127 147 - -
Adu03g02111 530 ProSiteProfiles Zinc finger C3H1-type profile. 415 443 IPR000571 GO:0046872
Adu03g02111 530 SUPERFAMILY CCCH zinc finger 279 305 IPR036855 GO:0046872
Adu03g02111 530 MobiDBLite consensus disorder prediction 495 517 - -
Adu03g02111 530 SUPERFAMILY CCCH zinc finger 184 212 IPR036855 GO:0046872
Adu03g02111 530 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 464 487 IPR000571 GO:0046872
Adu03g02111 530 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 257 IPR000571 GO:0046872
Adu03g02111 530 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 304 IPR000571 GO:0046872
Adu03g02111 530 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 417 442 IPR000571 GO:0046872
Adu03g02111 530 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 209 IPR000571 GO:0046872
Adu03g02111 530 PANTHER PROTEIN PHOSPHATASE RELATED 13 530 - -
Adu03g02111 530 SUPERFAMILY CCCH zinc finger 237 260 IPR036855 GO:0046872
Adu03g02111 530 Gene3D - 459 518 - -
Adu03g02111 530 Gene3D - 383 457 - -
Adu03g02111 530 MobiDBLite consensus disorder prediction 1 178 - -
Adu03g02111 530 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Adu03g02111 530 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 13 530 - -
Adu03g02111 530 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Adu03g02111 530 Gene3D - 157 221 - -
Adu03g02111 530 MobiDBLite consensus disorder prediction 489 530 - -
Adu03g02111 530 SMART c3hfinal6 415 442 IPR000571 GO:0046872
Adu03g02111 530 SMART c3hfinal6 278 305 IPR000571 GO:0046872
Adu03g02111 530 SMART c3hfinal6 232 259 IPR000571 GO:0046872
Adu03g02111 530 SMART c3hfinal6 461 488 IPR000571 GO:0046872
Adu03g02111 530 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Adu03g02111 530 MobiDBLite consensus disorder prediction 56 83 - -
Adu03g02111 530 MobiDBLite consensus disorder prediction 1 54 - -
Adu03g02111 530 ProSiteProfiles Zinc finger C3H1-type profile. 278 306 IPR000571 GO:0046872
Adu03g02111 530 ProSiteProfiles Zinc finger C3H1-type profile. 461 489 IPR000571 GO:0046872
Adu03g02111 530 Gene3D - 223 308 - -
Adu03g02111 530 SUPERFAMILY CCCH zinc finger 459 487 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02111 Adu-Chr3 41712265 41715850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02111 180 488 C2H2 Transcription Factor Family AT3G02830 41.846 3.73e-75 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu03g02111 zf-CCCH 1.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02111 - - gmx:100809626 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01639 01 51949271 51952683 Adu03g02111 03 41712265 41715850 ECH
Adu03g02111 03 41712265 41715850 Adu03g02111 03 41712265 41715850 ECH
Adu01g01639 01 51949271 51952683 Adu03g02111 03 41712265 41715850 PCT