Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02044 ATGATGATACCAAGTTATCGTTATTCTCATCATCATCCTATTCCTTTTGATCTCAATGAAGAACATCACCTCTTCACTACTACTACATATCCTCAACTCTCTTCTCCTTCTTCTTCTTTATCATCTTATTCTTATTGGGACCAACATCCAAACCACTTACAAATAACTCATCAACAGGCTGAGAAGATTCATGTTCCTTCTAGTGGAGGATCATGGGATCATATTCATGACCACAGAAAAAAAGAAGAAAAAGAAGAAGAAGAAGAGAAGGATGGAAACAAGAAGAGTAGTAAACTGCTCAAGTTGAAAATTTTGAAGAAAGAAGAAAGGAATGAAAATCATCATCTTGATAATCAAGCTCATCATGATGAGGAGGATCATGGTTCGGTGAAGTGGATGTCTTCAAAGATGAGAATCATGGGTGGTTCTGATACTAATAATTTCAGGTTAAGGTTTGATGAAGAGGGACCAAAGCAGCAAGCGCCGCTATCCCCTTTAGGAACTGATAATAGCAGCAGCAACAGTAGCAACAACAACTCTTCTTCAAACCGTCATGAAAATAATAATAATATGATTGTTAGGGTTTGTTCTGATTGCCACACCACAAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGCCCCAAGTCTCTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCGAGGAGAGCTGCCGCGGTGGCGGCCGCGGCGGAGGTTGCAGCATCAGAGAACGATACAACTCTCATGGCTTCTACTGATGATGATGATGGTATGAAGAAGAAAGAAAAGAAGTTACACAAGCACAACAACAAAGATAAGAAGTTGAAAGCCAAGTGTAGTGCACCAAATCAGTTGAAAAAGAAGCACAAAATTGGAACCAATAACAATAATAATACTAATAAATTATCTCATAGAGGAAGAAAGAAGGTTGGTTTTGAAGACTTGACAATAAGTTTGAGCAAGAACTTGGCTTTAAATGTGTTCCCTCATGATGAGAAAGAGGCTGCAATCTTGCTCATGGCCTTATCCTATGGTTTACTTCATGGATTTCCCTCAGATCGTTACTTAGATTAA 1077 0.3918 MMIPSYRYSHHHPIPFDLNEEHHLFTTTTYPQLSSPSSSLSSYSYWDQHPNHLQITHQQAEKIHVPSSGGSWDHIHDHRKKEEKEEEEEKDGNKKSSKLLKLKILKKEERNENHHLDNQAHHDEEDHGSVKWMSSKMRIMGGSDTNNFRLRFDEEGPKQQAPLSPLGTDNSSSNSSNNNSSSNRHENNNNMIVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAAVAAAAEVAASENDTTLMASTDDDDGMKKKEKKLHKHNNKDKKLKAKCSAPNQLKKKHKIGTNNNNNTNKLSHRGRKKVGFEDLTISLSKNLALNVFPHDEKEAAILLMALSYGLLHGFPSDRYLD 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02044 358 MobiDBLite consensus disorder prediction 109 128 - -
Adu03g02044 358 MobiDBLite consensus disorder prediction 156 189 - -
Adu03g02044 358 ProSitePatterns GATA-type zinc finger domain. 196 221 IPR000679 GO:0006355|GO:0043565
Adu03g02044 358 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 230 - -
Adu03g02044 358 SMART GATA_3 190 241 IPR000679 GO:0006355|GO:0043565
Adu03g02044 358 Coils Coil 259 279 - -
Adu03g02044 358 ProSiteProfiles GATA-type zinc finger domain profile. 194 226 IPR000679 GO:0006355|GO:0043565
Adu03g02044 358 MobiDBLite consensus disorder prediction 163 189 - -
Adu03g02044 358 Gene3D - 192 236 IPR013088 GO:0006355|GO:0008270
Adu03g02044 358 MobiDBLite consensus disorder prediction 71 100 - -
Adu03g02044 358 MobiDBLite consensus disorder prediction 288 302 - -
Adu03g02044 358 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 2 350 - -
Adu03g02044 358 CDD ZnF_GATA 195 227 IPR000679 GO:0006355|GO:0043565
Adu03g02044 358 Pfam GATA zinc finger 196 229 IPR000679 GO:0006355|GO:0043565
Adu03g02044 358 MobiDBLite consensus disorder prediction 284 305 - -
Adu03g02044 358 MobiDBLite consensus disorder prediction 57 100 - -
Adu03g02044 358 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 2 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02044 Adu-Chr3 38986809 38989349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02044 100 350 C2C2-Gata Transcription Factor Family AT4G26150 36.260 5.53e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Adu03g02044 GATA 4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02044 - - adu:107478822 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02083 01 88054419 88055463 Adu03g02044 03 38986809 38989349 PCT