Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02006 ATGGACAAGCTCTTTTCATTGAACTGTTGCATTGGTTACATTCTTATTGTTTACTCTCTCTTTGCATGTGTGCATGGCAAAGAACAATTGTCATGCAATCAAACACCATACCCAAATGTTTGCAAGCATTACGTTGAGACGGCTACATATACATTATCGACCCAAGATGAACATGTTTCTTCACCTTCTTATTCGTTCCACGGCATGGCCCTTAAGGTCACCATGGACCAAGCCATTAGAGCCCATCAACTAGTCTCAACCATGGACCCTAAAAACTTCAAAGAAAACAAGAAAGCCAAGATGGCTTGGGAAGATTGTTTGGAGCTCTATGAGGACACTATTTATCAGCTGAACCGTTCAATGAAATCGAAAAACCTAAACGACAAGTTAACATGGCAAAGTGCTTCCATTGCAAACCACCAAACATGCCAAAACGGTTTCATTGAATTCAACTTGAATTCTCACCTAAACTTCTTCCCAACCATGCTGTCCAACTTCTCCAAATTGCTCAGCAACTCCTTGTCCATCACCAAGGCCGTGTCCATGTTAGAAGCGGAGCAAGAAGTGAGAGGAAGGAGGAGGTTATTGCTTTCATCATCATCAAATCATAACAAACACGGACATGGCGGCTTCCCTGAATGGCTATCGGTTTCCGATAGGAGGCTTCTTCAGGCGGCGACACCACCAAAGGGAAGGAGGGTTGTGGTGCACGTGAAAGCAGGAGTTTACAGAGAGAATGTTGATATCAAGAAGACAGTGAAGAACATAATGATAGTTGGAGATGGAATTGACGCTACCGTTGTCACTGCTGACGGTAACGCACAAGATGGATCCACCACTTTCCGTTCAGCTACTTTTGGGGTTTCCGGTGACGGGTTCATAGCGCGGGACATAACCTTTGAGAACACGGCGGGTCCACAGAAGCACCAGGCGGTGGCTCTCCGGTCCGGCTCCGACCACTCCGTCTTCTACCGCTGCAGCTTCAAGGGCTACCAAGACAGCTTATACGCCTACGCCCAGCGCCAATTCTACCGCGACTGCGACGTGTACGGCACCGTGGACTTCATCTTCGGCGACGCCGCCTGCGTCCTCCAGAACTGCAACATCTACGTCCGAAGACCCATGGGCAACCAGGACATCACCGTCACCGCCCAAGGTAGAACCGATCCCAACGAGAACACCGGCATCGTGATCCACAACTGCCGCATAACTGCTGCCGGCGACATGAGATCCGTTCAGGGCTCCTTCAAGACCTTCCTTGGGCGTCCATGGCAGAAGTACTCAAGAACCGTGATCATGAAGAGCGGCCTAGACGGCTTGATTAACCCGGCCGGTTGGAAACCATGGAGTGGAAGCTTTGCTCTCAGCACACTCTATTATGGTGAGTACATGAACACTGGTCCTGGTGCTAACACTGCTGGCAGGGTTCACTGGCCTGGCTTTCATGTTATTAGTAGTCCCTCTGAAGCTGTCAAGTTTTCTGTTGGTGATTTCTTGGCTGGTGGTTCATGGATTCCCGGCACTGGTGTCCCCTTTGATGCAGGTTTGTGA 1551 0.4939 MDKLFSLNCCIGYILIVYSLFACVHGKEQLSCNQTPYPNVCKHYVETATYTLSTQDEHVSSPSYSFHGMALKVTMDQAIRAHQLVSTMDPKNFKENKKAKMAWEDCLELYEDTIYQLNRSMKSKNLNDKLTWQSASIANHQTCQNGFIEFNLNSHLNFFPTMLSNFSKLLSNSLSITKAVSMLEAEQEVRGRRRLLLSSSSNHNKHGHGGFPEWLSVSDRRLLQAATPPKGRRVVVHVKAGVYRENVDIKKTVKNIMIVGDGIDATVVTADGNAQDGSTTFRSATFGVSGDGFIARDITFENTAGPQKHQAVALRSGSDHSVFYRCSFKGYQDSLYAYAQRQFYRDCDVYGTVDFIFGDAACVLQNCNIYVRRPMGNQDITVTAQGRTDPNENTGIVIHNCRITAAGDMRSVQGSFKTFLGRPWQKYSRTVIMKSGLDGLINPAGWKPWSGSFALSTLYYGEYMNTGPGANTAGRVHWPGFHVISSPSEAVKFSVGDFLAGGSWIPGTGVPFDAGL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02006 516 PANTHER PECTINESTERASE 230 515 - -
Adu03g02006 516 PANTHER PECTINESTERASE 23 226 - -
Adu03g02006 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 180 IPR035513 -
Adu03g02006 516 SMART PMEI_2 25 176 IPR006501 GO:0004857
Adu03g02006 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 179 IPR035513 -
Adu03g02006 516 SUPERFAMILY Pectin lyase-like 224 515 IPR011050 -
Adu03g02006 516 Gene3D - 223 516 IPR012334 -
Adu03g02006 516 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 23 226 - -
Adu03g02006 516 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 230 515 - -
Adu03g02006 516 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 179 IPR006501 GO:0004857
Adu03g02006 516 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Adu03g02006 516 Pfam Pectinesterase 224 501 IPR000070 GO:0030599|GO:0042545
Adu03g02006 516 Pfam Plant invertase/pectin methylesterase inhibitor 31 176 IPR006501 GO:0004857
Adu03g02006 516 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Adu03g02006 516 CDD PMEI-like_3 30 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02006 Adu-Chr3 37145325 37147785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02006 10 516 Carbohydrate Esterase AT1G23200 47.950 4.51e-175 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02006 - - lja:Lj4g3v3099630.1 735.717