Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01969 ATGAGCATAGACATGAAAGAAGCAGCTGCAACTGCAACAACTGCAAGTGCCTTGGGTGCCAAGACGGCCAGGGCTTGCGACAGCTGCTTACGGAGGAGGGCACGGTGGTTCTGCGCTGCAGATGATGCATTCCTCTGCCATGCCTGCGACAACTTGGTCCACTCCGCGAACCAGTTAGCGAGTAGGCACGAGAGGGTTAGGCTTCAAACGGCGTCGTGCAAGCTCACCAACAAGGTAACCACCGCACACGCATGGCACAGTGGGTTCACGCGCAAGGCAAGAACACCACGCCACAACAACAACAAGCACTTAGCCTTACAACAAAGGCTTAAGGACCAAGTTTTATTCAACACCGCTTGTGTTCTTCCCGTTGTGCCGGAGCTTGGAGTTGAAGAAACAGCTCTTCTGGATGATCATGAGAGTGAGGAGCAGCTGCTGTGTCGCGTGCCCGTGTTTGACCCTTTCGATGCAGAGCTTTGCAATGATGTGTACGGTGAAGTCAGGGACGAGAAGAATCACGAAGAACGAGGTTGTTGTGATGACTTGGAGAGCTTCTCTGAGTTTCTGCCATCGGATATGGATCTTGCTGAGTTTGCTGCTGATGTTGAAACCCTGCTTGGAAGTGGGATTGATGAAGATTCATTAGGAATTGATTGCAAAGAAGAAGTTCAAAGAGAAGATGCATGCGTTAGAGCCGAAACCACCATTAATATTAAGGAGGGTGCAATGGTAATGGTAAAGGTGAAGGATGAGGAGCTTGATTCAGATACAGCAAGTCATCTTCAGTCAGTTTTTGACATCACAAACGATGACGAATTTGATTGGAATATCGAATCGGTGCTCTTATCGGCGGAGGAAAAGGCGACCACTGCCGCACCAGTAAGTAATAATAGTGATAGTGTTGGTGAAGAGAAAAAGAGGGACATATTTTTGAGACTAAACTATGAAGAGGTTATAAATGCTTGGGCAAGCCAAGGTTCTCCGTGGACAACAGGAACCCCTCCTCCGTTCAACCCTCATGATCATTCCTGGCTAAATTTCTTGGATCCAAGTGGTGGAGATGTTCATCAGTGCTCTTCTTATGGGGATGGCAGAAGCGTGAGGGGACATGTTGGAGATGGGGGAAGAGAAGCAAGAGTATCTAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCTAAGAAGATAAGATATGAAGTGAGGAAACTGAATGCGGAGAAGAGACCTAGAATGAAAGGTAGATTTGTCAAGAGATCATGCCTTGTTGGAGGAGCCACATCTTCCTTTCAACCCTCCTATAACTGA 1305 0.4774 MSIDMKEAAATATTASALGAKTARACDSCLRRRARWFCAADDAFLCHACDNLVHSANQLASRHERVRLQTASCKLTNKVTTAHAWHSGFTRKARTPRHNNNKHLALQQRLKDQVLFNTACVLPVVPELGVEETALLDDHESEEQLLCRVPVFDPFDAELCNDVYGEVRDEKNHEERGCCDDLESFSEFLPSDMDLAEFAADVETLLGSGIDEDSLGIDCKEEVQREDACVRAETTINIKEGAMVMVKVKDEELDSDTASHLQSVFDITNDDEFDWNIESVLLSAEEKATTAAPVSNNSDSVGEEKKRDIFLRLNYEEVINAWASQGSPWTTGTPPPFNPHDHSWLNFLDPSGGDVHQCSSYGDGRSVRGHVGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSCLVGGATSSFQPSYN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01969 434 Pfam B-box zinc finger 23 66 IPR000315 GO:0008270
Adu03g01969 434 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 13 424 - -
Adu03g01969 434 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 13 424 - -
Adu03g01969 434 CDD Bbox1_BBX-like 25 68 - -
Adu03g01969 434 SMART bboxneu5 21 68 IPR000315 GO:0008270
Adu03g01969 434 ProSiteProfiles Zinc finger B-box type profile. 21 68 IPR000315 GO:0008270
Adu03g01969 434 ProSiteProfiles CCT domain profile. 376 418 IPR010402 GO:0005515
Adu03g01969 434 Pfam CCT motif 376 418 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01969 Adu-Chr3 35917949 35919841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01969 13 418 C2C2-CO-like Transcription Factor Family AT1G25440 44.860 5.39e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Adu03g01969 zf-B_box 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01969 - - adu:107478728 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g01969 03 35917949 35919841 Adu05g02623 05 92823855 92825865 PCT