Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01967 ATGCCGGGTTCTGCTATTTCAAAACAAGAAAAATGTCCTAAGAAATTAGGAAAACAAAAGGTCCCAATATTCAAAAATCAAAAAACGAAATCTTACAAGAAAATCAGAATTATATACAGCGACCCATATGCTACAGATTATTCAAGCGACGAAGATAATGGTTCTAATAAACGAACAGTGAAGGAAATTCTGGTTCCAATACCTAGGCCTGGAATACCAAAACCGAATCGTATGAAAATGCCTCACAACTTTTATACTCGAAGCAAAAGCAGGTCGTCAAGCATTTTTAGAGGGATTCAACGGCGGAAGAATGGGAGATTTTCAGCTCAGATTCGAGATCCGTATCGACGGATTCGATTATGGCTTGGTACTTTTGATACTGAACAACAAGCTGTCATGGCTTATAGAAGTAAGCATCATGAGTTTGAAATGGCTAACAAATTGACATGTCCTGAAGCAAAAATTGATGTTTTGGTGGAACGAGTTGCGCCACCGCCGTTGCCCATGGACAATGTGTATCTCAATTTGGAGGAACTTGAAAACAGAACAGTATACAATGGTAACTACTACTTTGATGATTGTATTGATGGTTGTTGTAGTTCTTATATGGAGATTGGAGGAGGTAGTAGCGGCAATTTGCCCCTTCCCGACGTTGATTTAGTTGACATGGACATTAGTTGGATCGACGCAGCTTTCAAAGTGGATAGCCACTAA 714 0.395 MPGSAISKQEKCPKKLGKQKVPIFKNQKTKSYKKIRIIYSDPYATDYSSDEDNGSNKRTVKEILVPIPRPGIPKPNRMKMPHNFYTRSKSRSSSIFRGIQRRKNGRFSAQIRDPYRRIRLWLGTFDTEQQAVMAYRSKHHEFEMANKLTCPEAKIDVLVERVAPPPLPMDNVYLNLEELENRTVYNGNYYFDDCIDGCCSSYMEIGGGSSGNLPLPDVDLVDMDISWIDAAFKVDSH 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01967 237 CDD AP2 94 135 IPR001471 GO:0003700|GO:0006355
Adu03g01967 237 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Adu03g01967 237 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Adu03g01967 237 PANTHER CYTOKININ RESPONSE FACTOR 5-RELATED 31 149 - -
Adu03g01967 237 Gene3D AP2/ERF domain 95 150 IPR036955 GO:0003700|GO:0006355
Adu03g01967 237 SMART rav1_2 95 162 IPR001471 GO:0003700|GO:0006355
Adu03g01967 237 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700|GO:0006355
Adu03g01967 237 Pfam AP2 domain 96 136 IPR001471 GO:0003700|GO:0006355
Adu03g01967 237 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 149 - -
Adu03g01967 237 SUPERFAMILY DNA-binding domain 94 141 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01967 Adu-Chr3 35908519 35909232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01967 27 143 AP2-EREBP Transcription Factor Family AT1G68550 34.507 8.33e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Adu03g01967 AP2 4e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01967 - - adu:110278524 482.256