Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01913 ATGACCACCACAACCACCACCACTTCCTCGTCTCATATTCTCCGCCACACCTCCGACTTCATTTCCGGCGTCCTTTCTCAATCAGAGCTCCGGCGACATCTCGCCGCGACCCTCCGCCGCGAGACCACATCACTCTGCAGCCAAACAACCCTCAGACAGCTCAATCTCGCCTCCGACACCATTGAAAACGCCATCTCCTCCTCCAGCACCTCCATCCGAACCTCTTCCCTCACCCTCGCCGAGAAGCTCCTCCTCCCTCTCTCCGAACTCCCCCTCTCCTCCTTCCTCCTCTCTCTCCTCCTATTCCTCTCGAACCGCCACGTGGATTCCGCCGTACTCCTCCTCCAAATCTTCCACTCCAATCCATCCCTGGCCAGATCCGAAATCGCTCCGGTTCTCTACGATCACCTCTTCTCCCTCCACCTGCTCCCTGTTTTCCGGTGGTTCGATGAGCACAGAACGCGGATTTTGTCCGAATCGAGCAGTGATGCGAGTGATTATTCAATTACAGAGGGGTCAGTGGTGCTGCCGTGCACCAAATTGTTGTCGAGGATGAGTGAGGATCAGGCTTCGAAGCTGAGGGAGTTGGAGAGAGAGTACCAGGAGGCTATCGACCAAAATTGCAGGGTTGTTGCTGTGTATTTCAAGGAGGTTTTGACCAGTAAAAGCAGTGAAGCGTCGATTAGTCCACCGCTGTTGACTCTGAAGAGCACGGAAGATGTTGACGGAGGGAAGAACAAAGAGGAGATTCAAGAATCCCAAATGTCTGTGTTGGAGAATGGACGGTATAATCCAATATGGTCCGAAAGGGAGACATCTATTGAATTCTTGAGCAGCACCTCCAGCAGCAAATCTTCACATATAAATTATTATCCTCAAAGAGTCTCTCCCAGAATCCTCAAACGCCAAAAATCTTCGAAAGATTCAGCACCAGATGACGACAAAAATGTGGCATTGTTGGAGCCTCGACAAAGCCAGTCCCATGAACAAATGCAACCTAACTTGAAAGAATTCAGAGGCTCCCCAGAGTATCATATGGCAGAGTATGATAATCCGCCGCCTGGAACTGCAAAAAATACGCCTCCTAAGGACTTTGTCTGTCCGATAACTAGTAACATATTTGATGATCCTGTGACTCTTGAGACAGGACAAACATACGAACGTAAAGCTATCGAGGAATGGTTCAAAACTGGCAACTCAACTTGTCCAATCACTCGCCAGAAGCTGCAAAACACGCAGTTACCTAAGACAAACTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACACAACCCTCATTCAGTTCCACCGCCATGTGAGAGTCCATATGAAGAAAGCAAGGCAGTAACGAAGACAATAAAGGTTTCAACTCTGCCTAAAGATGTCGTAAAACAAGCCACGGTGGATGGGATCATTAGTGAGTTGCGCCATGCAATCAATAATCTCTATATGTCAGATATTCTTGAAGAATCTGAAATGGCTGTGCTTCATATTGAGAAGCTTTGGAGAGAAGTGAATTTAGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAATGGGTTTATGGAGATCCTTTTCAATTCTGTTCAGCCCCGGGTGCTACGAGCAGCAGTGTTCCTTCTGGCCGAAACCGGTTCTAGAGACCACTCTGTTATTCAGACGCTTACGCGTGTGGACACTGACGTAGAATGTATCATGGCACTTTTCAAGAAAGGGTTGACAGAAGCTGTTGTGCTGCTGTATCTGCTAAAACCTTCCACTACAAGTCTTGCTGAGATGGCCACACCAGAATCTCTCCTAGCAGCATTCAATAAGGAAGAGGAAAACTTGGTTCCAATGTGTCTGAAGCCCAAAACAGCTGCCTTGCTTTTATTCGCACAGGTTATTGGAAGTAGTGAAGAAAGAATTGCGTTGTCAGCTGCCAAGTGTGTTTTCTCTGAAAAAGCAATCGGAAATATTGTCGCCAGTTTAGAAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTAAGATGCATGCAAGAGGATGGGACTTGCCGGAACACCATTGCTGAAAAGGCAGACTTGTCTCCTATTTTGGAAAGTTTCACTGGTGCAACTGATGTAGAGTGTTTAAAGATTGTCCAATTGTTCTCTGAATTAATAAAGTTAAATAGGAGGACATTTAATGAACAAATCCTCCGCTTTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACACTGCTCATTTGTCTGCAGACAGGCCTTCAAGACCAATGTCCTGTCATGGCCGGCCTTTTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGCATATACCGTGAAGAGGCAATAGATACTCTCATTTCATGCCTGAGAAACACAGATTTCCCTGCTGCTCAATTAGCAGCTGCTCATACAATCATGTCACTTCAAGGGAGGTTCGACTTCTCTGGAAAGTCTCTTACCAGAGAAGTCCTTCTTAAACGTGCAGGTGTTGACAGAAGTCCTGGATATCTTGAACAGGTGCTCCAGATCAACAGCTTCTACCCAGAAACTGAAATAACTCCTGAAGAAGAGAAAGCAGCGGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTCAGCCACGAGTTTGGTATACTTTTCGAGGCTTTAGCAGATGGCATAAATAGCCGAAATCCAGAACTACGGTCAGCATGCTTTATATCAGCTACGTGGCTCGTATACATGTTGACCATTCTACCGGACACAGGGGTACAAGGAGCAGCGCGTGTCTGCTTGCTGAAACAGTTCATAACAAAACTAAATTCTGCTAAGGACATTCATGATAGAGTCCTTTCTATGCTTGCTCTAAATAGTTTTCTCCATTTCCCTGATGGCTTTCACGATCTAACTTCCTACACTAAGGATATCTTAAAAGGTTTGAGAGAGCTTAAGAGAATCTCTCCGTTGACATCTGAAATTCTTAAAGTTCTGGTTGAAGAGAATGAATCTAAAAGTGACATATGGATACATAAAGAGCTGATTCGAGTAGATTGCAGCGAGAATGGGGAAGTGCTGTCTCTCATTTGTTTCAAGAATAAATTATTTTCGGGCCACTCTGATGGAACTATTAAGGTTTGGATGGTAAAGGATACTTCATTCCATCTCTTGCAAGAGATCCAAGAACATCTTAAGCCTGTAACAAGTTTGGTGATTTCAGAATCTGGTGACAGACTATACAGCGGTTCACTTGATCGAACTGCAAAGGTTTGGTCTGTTGGAAAGGCAGCAATACATTGTGTACAGGTTCATGATATGAAGGAGCAGATTCATAATTTAATTGTAACTGACAGCATATCTTGTTTCACTGCACAGGGCGCTGGTGTCAAGGTTCAATCATGGAATGGAGAATCAAAAGTGTTAAATTCTAATAAATACGTTAAGTGCTTGGCTCATGTTCATGGGCGATTATACTGCGGCTGCCACGATAGCAGTGTTCAGGAGATAAATCTGGACACCGGAAACGTCAGTACTATTCAAAGTGGTTCTAAAAAACTACTTGGCAAAGCCTATCCTATTCATGCACTGCAACTTCATGGTGAACTTATATATGCAGCTGGGTCTTCCTTAGATGGATCTGTTATAAAGATGTGGGACAATTCTAGTTATAGATTGCTGGGATCTCTGCAAACCGGATTGGAAGTGCGGGCTATGGCTGTGAGCTCAGAATTAATTTACTTGGGGGGCAAGGGAGTAGCTGTGGAAATCTGGGATAAGACGAAACACAACAAACTTGACACATTACAAACGGCCACAAACAGTAGGGTTCTTTGCATGTCTCTAGACAGGAATGAAGAAATTTTGGTAATTGGAACTTCTGATGGCCAAATTCAGGCATGGAGAGTAAATTAA 3906 0.4462 MTTTTTTTSSSHILRHTSDFISGVLSQSELRRHLAATLRRETTSLCSQTTLRQLNLASDTIENAISSSSTSIRTSSLTLAEKLLLPLSELPLSSFLLSLLLFLSNRHVDSAVLLLQIFHSNPSLARSEIAPVLYDHLFSLHLLPVFRWFDEHRTRILSESSSDASDYSITEGSVVLPCTKLLSRMSEDQASKLRELEREYQEAIDQNCRVVAVYFKEVLTSKSSEASISPPLLTLKSTEDVDGGKNKEEIQESQMSVLENGRYNPIWSERETSIEFLSSTSSSKSSHINYYPQRVSPRILKRQKSSKDSAPDDDKNVALLEPRQSQSHEQMQPNLKEFRGSPEYHMAEYDNPPPGTAKNTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFKTGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEHNPHSVPPPCESPYEESKAVTKTIKVSTLPKDVVKQATVDGIISELRHAINNLYMSDILEESEMAVLHIEKLWREVNLGVDIHSMLSKPPIINGFMEILFNSVQPRVLRAAVFLLAETGSRDHSVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLKPSTTSLAEMATPESLLAAFNKEEENLVPMCLKPKTAALLLFAQVIGSSEERIALSAAKCVFSEKAIGNIVASLEAEWAEERIAAVEILLRCMQEDGTCRNTIAEKADLSPILESFTGATDVECLKIVQLFSELIKLNRRTFNEQILRFIKEEGPFSTMHTLLICLQTGLQDQCPVMAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNTDFPAAQLAAAHTIMSLQGRFDFSGKSLTREVLLKRAGVDRSPGYLEQVLQINSFYPETEITPEEEKAADDWERKIASVLVSHEFGILFEALADGINSRNPELRSACFISATWLVYMLTILPDTGVQGAARVCLLKQFITKLNSAKDIHDRVLSMLALNSFLHFPDGFHDLTSYTKDILKGLRELKRISPLTSEILKVLVEENESKSDIWIHKELIRVDCSENGEVLSLICFKNKLFSGHSDGTIKVWMVKDTSFHLLQEIQEHLKPVTSLVISESGDRLYSGSLDRTAKVWSVGKAAIHCVQVHDMKEQIHNLIVTDSISCFTAQGAGVKVQSWNGESKVLNSNKYVKCLAHVHGRLYCGCHDSSVQEINLDTGNVSTIQSGSKKLLGKAYPIHALQLHGELIYAAGSSLDGSVIKMWDNSSYRLLGSLQTGLEVRAMAVSSELIYLGGKGVAVEIWDKTKHNKLDTLQTATNSRVLCMSLDRNEEILVIGTSDGQIQAWRVN 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01913 1301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 436 IPR013083 -
Adu03g01913 1301 Pfam WD domain, G-beta repeat 1055 1090 IPR001680 GO:0005515
Adu03g01913 1301 Coils Coil 186 206 - -
Adu03g01913 1301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1058 1091 - -
Adu03g01913 1301 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1300 - -
Adu03g01913 1301 SUPERFAMILY RING/U-box 358 437 - -
Adu03g01913 1301 ProSiteProfiles Trp-Asp (WD) repeats profile. 1058 1091 IPR001680 GO:0005515
Adu03g01913 1301 ProSiteProfiles U-box domain profile. 360 435 IPR003613 GO:0004842|GO:0016567
Adu03g01913 1301 MobiDBLite consensus disorder prediction 301 319 - -
Adu03g01913 1301 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1300 - -
Adu03g01913 1301 SUPERFAMILY ARM repeat 26 1004 IPR016024 -
Adu03g01913 1301 CDD RING-Ubox_PUB 365 407 IPR045210 -
Adu03g01913 1301 Pfam U-box domain 362 432 IPR003613 GO:0004842|GO:0016567
Adu03g01913 1301 Gene3D - 1117 1301 IPR015943 GO:0005515
Adu03g01913 1301 SUPERFAMILY WD40 repeat-like 1021 1300 IPR036322 GO:0005515
Adu03g01913 1301 Gene3D - 982 1114 IPR015943 GO:0005515
Adu03g01913 1301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1267 1301 - -
Adu03g01913 1301 SMART Ubox_2 364 428 IPR003613 GO:0004842|GO:0016567
Adu03g01913 1301 MobiDBLite consensus disorder prediction 283 333 - -
Adu03g01913 1301 ProSiteProfiles Trp-Asp (WD) repeats profile. 1267 1301 IPR001680 GO:0005515
Adu03g01913 1301 SMART WD40_4 1051 1090 IPR001680 GO:0005515
Adu03g01913 1301 SMART WD40_4 1009 1046 IPR001680 GO:0005515
Adu03g01913 1301 SMART WD40_4 1259 1299 IPR001680 GO:0005515
Adu03g01913 1301 SMART WD40_4 1171 1217 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01913 Adu-Chr3 33813836 33820709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01913 362 443 U-box Gene Family AT5G42340 47.561 1.32e-17 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01913 - - gmx:100808867 1776.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g01913 03 33813836 33820709 Adu03g01913 03 33813836 33820709 ECH