Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01904 ATGGATGTTGCTGAGCTTGAAGAAAATCTTTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAGGACTCTTTCTGCAATATATTGTAAAATATTGACAATATTTCCTTCTCTAGAAGCAGCTAAGCCTAGGAGCAAATCTGGAATACAGGCATTATGTTCACTGCATGTAGCTTTAGAGAAGTCGAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACCTGGCGATAACTGGCGACGCCGTACTTCAAAAATTTGAAAAGGCTAAGTCTGCACTTGTTGACAGTCTTAAACTGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGCAGGTTGAGAAAATTGTGGAAGAACTTGCAAGTACGGTTTTTGCAATTGACCCCTTAGAAAAACAAGTTGGCGACGATTTAATTGCATTGCTTCAGCAGGGAAGGAAGCTTGACAACTCTAATGACAGTAGTGAACTTGAATGTTTTCATCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTACTGAACGAAGAGCTCTCAAAAAACTCATTGAAAGGGCTCAGGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACACCTCATGAGGAAATATTCTAAGTTGTTTAGAAGTGAATTCTCAGATGATAATGATTCTCAGGGCTCCCAACCCTGTTCACCTACTGTTAATGGATATGTTGAGGATGGTGTTCAGACTCAAGCGTTTGATAGAGTATTTTCAAAACTTAGTTCCATTAACTTAAAGCCGAATAATAGAAAATCAGGCCAGATGCCCCTTCCCCCTGAAGAGTTGAGGTGTCCGATATCTCTGCAACTCATGAGTGATCCTGTTATAATTGCTTCAGGTCAAACATACGAAAGGGCTTGTATAGAAAAATGGTTCAGTGATGGGCATAACACCTGCCCAAAGACTCAACAGAAACTTCCACATCTTTTATTGACTCCTAATTACAATGTCAAGAATCTTGTGGCTAGTTGGTGTGCACAGAATGGAATTCCTATTCCTGAAGGCCCTCCCGAATCTCTTGATTTTAACTATTGGAGATTGGCTTTATCAGATACCGATTCCACAAATTCAAAATCTGTTAACAGTGTAAATTCTTGCAAGTTGAAAGGTGCAAAAGTGGTTCCAGTAGAAGAGAGCGGCATGTCAGAGCAAACCGGGGTAGCTGGAGCTGAAAGTGTGTCTACACAAGAGGACGATAATGAACAGTATCTTAGTTTTCTGAAAGTCTTAACAGAAGGGAACGACTTACAGGGGAAGTGTAAGGTTGTACAAAGGTTAAGGATGTTGCTAAGGGATGATGAGGACGCCAGGACATTTATGGGTGCTAATGGATTTGTTGAAGCACTTACGCAGTTTCTCCAATCAGCTTTGCGTGAAGGAAATGCGATGGATCAAGAAAATGGAGCTATGGCCCTGTTCAACCTTGCTGTGAACAATGACAGAAACAAGGAACTGATGATATCAGCCGGAGTCTTATCCTTGTTGGACGAAATGATCTATAAACCTACTTGCTATGGGTGTGCAACTGCCCTGTATCTAAATCTCTCTTGCCTTGAAGAAGTCAAGCCTATGATTGGTTCAGGTCAGGCTGTCCCATTCCTAGTCAAGATTCTTAAATCCAGCTCTGATGTTCAATGCAAGCTAGATTCGCTCCACACACTCTATAATCTTTCCACCGTACCCACCAACATTCCATACCTCCTTTCATCTGGAATCATTGTTGGCTTGCAATCCCAGCTTGTAGGCCAGGGTGATAGTGTGTGGACCGAAAAATGCATAGCTGTATTGATAAATTTGGCGGTTTCTCAATTGGGTAGAGAGGAAATTGTGTCATCTCCAGGAATCATAAGCACATTGGCGTCAATACTCGACACTGGTGAGCTCCTAGAGCAAGAGCAAGCCGTCGCATGTCTCCTAATTTTGTGTAACCGGAGCAAGAAATGTTGCGAGATGGTCCTTCAAGAAGGGGTCATCCCAGCTTTCTGTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAGGTCTCAGTGCAAATCTTTCGATGCCTAG 2106 0.4212 MDVAELEENLFAASDAKLHGEMCRTLSAIYCKILTIFPSLEAAKPRSKSGIQALCSLHVALEKSKNVLQHCSECSKLYLAITGDAVLQKFEKAKSALVDSLKLVEDIVPQSIGCQQVEKIVEELASTVFAIDPLEKQVGDDLIALLQQGRKLDNSNDSSELECFHQAATRLGITSSRAALTERRALKKLIERAQAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVNGYVEDGVQTQAFDRVFSKLSSINLKPNNRKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFSDGHNTCPKTQQKLPHLLLTPNYNVKNLVASWCAQNGIPIPEGPPESLDFNYWRLALSDTDSTNSKSVNSVNSCKLKGAKVVPVEESGMSEQTGVAGAESVSTQEDDNEQYLSFLKVLTEGNDLQGKCKVVQRLRMLLRDDEDARTFMGANGFVEALTQFLQSALREGNAMDQENGAMALFNLAVNNDRNKELMISAGVLSLLDEMIYKPTCYGCATALYLNLSCLEEVKPMIGSGQAVPFLVKILKSSSDVQCKLDSLHTLYNLSTVPTNIPYLLSSGIIVGLQSQLVGQGDSVWTEKCIAVLINLAVSQLGREEIVSSPGIISTLASILDTGELLEQEQAVACLLILCNRSKKCCEMVLQEGVIPAFCGKARAILFTSVRSQCKSFDA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01904 701 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Adu03g01904 701 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Adu03g01904 701 Pfam U-box domain 278 347 IPR003613 GO:0004842|GO:0016567
Adu03g01904 701 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 463 509 IPR000225 GO:0005515
Adu03g01904 701 Coils Coil 176 196 - -
Adu03g01904 701 Gene3D - 419 686 IPR011989 -
Adu03g01904 701 PANTHER U BOX DOMAIN-CONTAINING 1 680 - -
Adu03g01904 701 SUPERFAMILY ARM repeat 428 681 IPR016024 -
Adu03g01904 701 CDD RING-Ubox_PUB 281 323 IPR045210 -
Adu03g01904 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 350 IPR013083 -
Adu03g01904 701 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 680 - -
Adu03g01904 701 SUPERFAMILY RING/U-box 276 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01904 Adu-Chr3 33590536 33594484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01904 1 680 U-box Gene Family AT1G24330 67.055 0.0 925
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01904 - - adu:107478647 1352.81