Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01788 atgaagaaagaaaaggagcattccgacccttggcatccgacggagCTCGGCCACAAGTCCGACGGCCAGACGATCGAGTGGCTCCTATGCCAGGCCGAGCCCTCAATCATCGCCGCCACCGGAACCGGAACCACTCCCGCCAGCTTCTCCTCCGTTTCTGTCTCCGTACGCGGCGGTGCTGGCTCTCTCTCTTCTCCTTCCTCAACCTCCGCATCGTCTTCGCTCGACCACAAGCCCTTGCTCGCTCCCACTCCCTTCATACTCGGCAAGTGCATACGCACTGACGACGACGCTTCCGTCAAGGACGATGACGTCTCCGTGGGTCCCGCCGTGGGGTCCTTAGTGATTGCTATTTCAGATAAAACTGAGATTTTTTCATAA 381 0.5171 MKKEKEHSDPWHPTELGHKSDGQTIEWLLCQAEPSIIAATGTGTTPASFSSVSVSVRGGAGSLSSPSSTSASSSLDHKPLLAPTPFILGKCIRTDDDASVKDDDVSVGPAVGSLVIAISDKTEIFS 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01788 126 MobiDBLite consensus disorder prediction 56 77 - -
Adu03g01788 126 MobiDBLite consensus disorder prediction 56 79 - -
Adu03g01788 126 ProSiteProfiles TCP domain profile. 1 39 IPR017887 -
Adu03g01788 126 Pfam TCP family transcription factor 15 71 IPR017887 -
Adu03g01788 126 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 112 IPR005333 GO:0003700
Adu03g01788 126 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 15 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01788 Adu-Chr3 30542122 30542502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01788 15 108 TCP Transcription Factor Family AT5G23280 63.918 6.46e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Adu03g01788 TCP 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01788 K16221 - aip:110269354 161.77