Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01776 ATGGCGCCTCTTATTATGATTTCATCATGTTTCGTTTGGAATCTCTGTATGGTTCTTATCGGAGTAAGTGTTAGTGTCCCTGTTGAAGCTAAATCTTGGCTTAAAGCTCATGCAACTTTCTATGGGGCCAATCAAAGTCCCATCAGCCTCGGGGGAGCTTGTGGTTATGACAACACCTTTCATGCTGGGTTTGGTGTCAACACTGCGGCGGTGAGCACCATGCTCTTCAGAGGTGGTGAGGCTTGTGGAGCATGCTACCAAGTGATTTGCGACTACCGGGTCGACCCAAAATGGTGCCTCCGGCGACGAAGTGTGACCGTAACTGCCACCAATTTTTGCCCTCCGAACAACCAGGGAGGGTGGTGTGATCCACCTCACCATCACTTTGATATGTCCGCTCCGTCTTTCTTTCGCATTGCAAGACAAGGCAGTGAAGGCATTGTTCCCGTTCTCTATACAAGGGTGCCATGCAAAAGAAGAGGTGGAGTGCGATTCACGTTGAGGGGGCAATCCAATTTCAACATGGTGATGATATCCAACGTGGGAGGCAGCGGGGACGTGAAGGCCGTCTCGATCAAAGGATCGAGAGGTCGCTCGTCTTGGCTGCCCATGCACCGCAACTGGGGAGCCAACTGGCAAAGCAGTGTGGATCTCCGGAACCAGAGGCTCTCATTCAAGCTTACATTGGCAGATGGGAAGACACTGCTGTTCCTCAATGTTGTTCCTTCTAGTTGGAGGTTTGGACAGACGTTTTCATCAAGAAACCAGTTCTCTTGA 777 0.5071 MAPLIMISSCFVWNLCMVLIGVSVSVPVEAKSWLKAHATFYGANQSPISLGGACGYDNTFHAGFGVNTAAVSTMLFRGGEACGACYQVICDYRVDPKWCLRRRSVTVTATNFCPPNNQGGWCDPPHHHFDMSAPSFFRIARQGSEGIVPVLYTRVPCKRRGGVRFTLRGQSNFNMVMISNVGGSGDVKAVSIKGSRGRSSWLPMHRNWGANWQSSVDLRNQRLSFKLTLADGKTLLFLNVVPSSWRFGQTFSSRNQFS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01776 258 SUPERFAMILY PHL pollen allergen 159 253 IPR036749 -
Adu03g01776 258 Pfam Expansin C-terminal domain 163 242 IPR007117 -
Adu03g01776 258 Pfam Lytic transglycolase 68 152 IPR009009 -
Adu03g01776 258 PANTHER EXPANSIN-A15 8 258 IPR002963 GO:0009664
Adu03g01776 258 Gene3D - 21 158 IPR036908 -
Adu03g01776 258 PANTHER EXPANSIN-A12 8 258 - -
Adu03g01776 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Adu03g01776 258 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Adu03g01776 258 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Adu03g01776 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Adu03g01776 258 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Adu03g01776 258 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Adu03g01776 258 SMART dpbb_1 68 152 IPR007112 -
Adu03g01776 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 253 IPR007117 -
Adu03g01776 258 Gene3D - 162 258 IPR036749 -
Adu03g01776 258 SUPERFAMILY Barwin-like endoglucanases 32 180 IPR036908 -
Adu03g01776 258 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Adu03g01776 258 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Adu03g01776 258 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Adu03g01776 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Adu03g01776 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Adu03g01776 258 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Adu03g01776 258 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Adu03g01776 258 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Adu03g01776 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 162 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01776 Adu-Chr3 30220982 30224040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01776 15 256 Expansin Gene Family AT3G15370 61.029 5.89e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01776 - - ahf:112735861 536.569