Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01581 ATGGGGGGAGGCCACGGCGAGGGCACAACCTACAAAGGCATAACCATACACCAACCTAAGCGGTGGCACACCGTCGCCGGCAAGGGTCTCTGCGCTGTTATGTGGTTAGTTTCGCTCGTTCCTTTTCTCCGTTTCGATCTGCACTCGCTACTGATCCATATTCACCATGTCTCGCTTTTTGTGTTCTTCAGGTTTTGGGTGTTTTACAGAGCAAAGCAAGATGGTCCTGTAGTATTGACATCAGCTCAGGAAAGGGGAACAACAAATCTTGAAGAGTCTGTGATTGCCATTGTTGATTTAAGCTTAACCTGTTGTAATGGTTGGGATGACGTTTTGGCCCACAAACAGGCCATTCCATTCTGGCGCTTCTGTGGTGGTGTTGGGAGGACTGCCCATGCCGAAAACAGACATTCCAATGGACAAGGACCCCTTGATTTGCTCAAGAATGTTGAGAGCAATGCTGAGGTGTGTGTGCTGCATTGCATTAAAGGTTTTGGATGTGGATGCTCTTTACATTTCCCACATCTTGCTGTTGTTGCTTTGCTCTATAAGCGCGTCGACGATGAGGTGAACAAAGTAGCGATAGTTGCTAACATGGCTGCCACGGCGGCTAGAGTAGCCGTGGTGAAAGCTGTTCAGAATAGAATAGATGGACAATTTTGCTATACTGATCTGTCGCGCAACACATCGAAAAAGAGAAAATTATTTTTGGGTTTGGGTTCGGGCGGGTCGGGGTTACGGATCGGCCTCCGCGAAGAGGAAGAACAAGCTGCAGTCGACGCCATGGTAATCAATGTTTCTTGTTCGTTCCTCATGCTTAAAATCGATATTCTCCGTTCTTCGATCTGTTCTCACCACGCACTCTTCTTTTTTCAGGTGAAGTACTCCAGAGAACCCGAAAATCCCACCAAGTCTTGCAAGGCTAGAGGCTCTGATTTGAGGGTTCATTTCAAGAACACTAGGGAGACTGCCTTTGCTATCAGGAAGTTGCCACTTGTTAAGGCAAAGAGGTATTTGGAGGATGTTTTGGCCCACAAACAGGCCATTCCATTCCGACGCTTCTGTGGTGGTGTTGGGAGGACTGCCCAGGCAAAGAACAGACATTCCAATGGACAAGGACGCTGGCCTGTAAAATCAGCTAAATTCATCCTTGATTTGCTCAAGAATGCTGAGAGCAATGCTGAGGTGAAAGGTTTGGATGTGGATGCTCTTTACATTTCCCACATCCAAGTCAACCAAGCACAAAAACAAAGACGCCGCACCTACCGTGCTCACGGAAGAATCAATCCCTACATGTCATCTCCCTGCCACATAGAGTTGATCTTATCCGAGAAGGAAGAGCCTGTTAAGAAAGAGCCGGAGTCCCAGTTGGCAACAAGCAAGAAGTCTCAAGGCCTTCGTAGTGGTGCTTCATCCTAA 1419 0.4778 MGGGHGEGTTYKGITIHQPKRWHTVAGKGLCAVMWLVSLVPFLRFDLHSLLIHIHHVSLFVFFRFWVFYRAKQDGPVVLTSAQERGTTNLEESVIAIVDLSLTCCNGWDDVLAHKQAIPFWRFCGGVGRTAHAENRHSNGQGPLDLLKNVESNAEVCVLHCIKGFGCGCSLHFPHLAVVALLYKRVDDEVNKVAIVANMAATAARVAVVKAVQNRIDGQFCYTDLSRNTSKKRKLFLGLGSGGSGLRIGLREEEEQAAVDAMVINVSCSFLMLKIDILRSSICSHHALFFFQVKYSREPENPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQLATSKKSQGLRSGASS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01581 472 MobiDBLite consensus disorder prediction 446 472 - -
Adu03g01581 472 PANTHER 60S RIBOSOMAL PROTEIN L17-1 ISOFORM X1 89 159 - -
Adu03g01581 472 Pfam Ribosomal protein L22p/L17e 308 443 IPR001063 GO:0003735|GO:0005840|GO:0006412
Adu03g01581 472 TIGRFAM uL22_arch_euk: ribosomal protein uL22 295 445 IPR005721 GO:0003735|GO:0006412|GO:0015934
Adu03g01581 472 MobiDBLite consensus disorder prediction 458 472 - -
Adu03g01581 472 Hamap 50S ribosomal protein L22 [rplV]. 291 445 IPR005721 GO:0003735|GO:0006412|GO:0015934
Adu03g01581 472 SUPERFAMILY Ribosomal protein L22 293 445 IPR036394 GO:0003735|GO:0005840|GO:0006412
Adu03g01581 472 Gene3D Ribosomal protein L22/L17 89 222 IPR036394 GO:0003735|GO:0005840|GO:0006412
Adu03g01581 472 PANTHER 60S RIBOSOMAL PROTEIN L17-1 ISOFORM X1 293 463 - -
Adu03g01581 472 ProSitePatterns Ribosomal protein L22 signature. 418 442 IPR018260 GO:0003735|GO:0005840|GO:0006412
Adu03g01581 472 Gene3D Ribosomal protein L22/L17 292 470 IPR036394 GO:0003735|GO:0005840|GO:0006412
Adu03g01581 472 PANTHER 60S RIBOSOMAL PROTEIN L17 89 159 IPR005721 GO:0003735|GO:0006412|GO:0015934
Adu03g01581 472 PANTHER 60S RIBOSOMAL PROTEIN L17 293 463 IPR005721 GO:0003735|GO:0006412|GO:0015934
Adu03g01581 472 CDD Ribosomal_L22 306 442 IPR001063 GO:0003735|GO:0005840|GO:0006412
Adu03g01581 472 SUPERFAMILY Ribosomal protein L22 109 156 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01581 Adu-Chr3 25056288 25062107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01581 293 472 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.111 3.38e-109 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01581 K02880 - gmx:100816536 342.043