Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01580 ATGGAGAGAGTTAATAATGGGAGGAGAAGGGAGAGGGATACGACGGAGAAGGAGGGGAAGGAGAGGAGGGTCGGGGATGGGGTAAGCCTCCGCGAAGAGGAAGAACAAGCTGCAATCGCCGCAATGGTGAAGTACTCCAGAGAACCCGTAAATCCCACCAAGTCTTGCAAGGCTAGAGGCTCTGATTTGAGGGTTCATTTCAAGAACACTAGGGAGACTGCCTTTGCTATCAGGAAGTTGCCGCTTGTTAAGGCAAAGAGGTATTTGGAGGATGTTTTGGCCCACAAACAGGCCATTCCATTCCGACGCTTCTGTGGTGGTGTTGGGAGGACTGCCCAGGCAAAGAACAGACATTCCAATGGACAAGGACGCTGGCCTGTAAAATCAGCTAACTTCATCCTTGATTTGCTCAAGAATGCTGAGAGCAATGCTGAGGTGAAAGGTTTGGATGTGGATGCTCTTTACATTTCCCACATCCAAGTCAACCAAGCACAGAAACAAAGACGCCGCACCTACCGTGCTCACGGAAGAATCAATCCCTACATGTCATCTCCCTGCCACATAGAGTTGATCTTATCCGAGAAGGAAGAGCCTGTTAAGAAAGAGCCGGAGTCCCAGTTGGCAACAAGCAAGAAGTCTCAAGGCCTTCGTAGTGGTGCTTCATCCTAA 669 0.4993 MERVNNGRRRERDTTEKEGKERRVGDGVSLREEEEQAAIAAMVKYSREPVNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSANFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQLATSKKSQGLRSGASS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01580 222 CDD Ribosomal_L22 56 192 IPR001063 GO:0003735|GO:0005840|GO:0006412
Adu03g01580 222 SUPERFAMILY Ribosomal protein L22 42 195 IPR036394 GO:0003735|GO:0005840|GO:0006412
Adu03g01580 222 MobiDBLite consensus disorder prediction 208 222 - -
Adu03g01580 222 MobiDBLite consensus disorder prediction 1 31 - -
Adu03g01580 222 Hamap 50S ribosomal protein L22 [rplV]. 41 195 IPR005721 GO:0003735|GO:0006412|GO:0015934
Adu03g01580 222 Gene3D Ribosomal protein L22/L17 42 220 IPR036394 GO:0003735|GO:0005840|GO:0006412
Adu03g01580 222 PANTHER 60S RIBOSOMAL PROTEIN L17 42 222 IPR005721 GO:0003735|GO:0006412|GO:0015934
Adu03g01580 222 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 42 222 - -
Adu03g01580 222 MobiDBLite consensus disorder prediction 196 222 - -
Adu03g01580 222 ProSitePatterns Ribosomal protein L22 signature. 168 192 IPR018260 GO:0003735|GO:0005840|GO:0006412
Adu03g01580 222 Pfam Ribosomal protein L22p/L17e 58 193 IPR001063 GO:0003735|GO:0005840|GO:0006412
Adu03g01580 222 TIGRFAM uL22_arch_euk: ribosomal protein uL22 45 195 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01580 Adu-Chr3 25036149 25040373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01580 42 222 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.188 3.33e-114 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01580 K02880 - gmx:100499784 340.117