LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu03g01561	ATGATGTCAAGGTCGTATACAAATCTCTTAGATTTGGCTTCTGGGAATTTCCCGGCAATGGGGAATTCGTTTAAAGAACGGCGGCGGATGCCAAGGGTTATGAGTGTACCTGGGATTGTCACAGAAGTAGATGATGATCAGGCAGTTAGTGTTTCTTCTGATAACCCGTCAACTATTTCTACAGATAGAATGATCATTGTAGCAAATCAGCTACCTTTAAAAGCAAAGCGACGAGAGGACAACCAAGGTTGGAATTTCAGTTGGAATGAGGATTCCTTGCTTTTACAACTCAAGGATGGACTTCCAGAAGAGATGGAGGTTCTTTATGTTGGATCATTGCGTGTTGACATTGACCCAGCTGAGCAGGATGATGTGTCACAGTATTTGTTGGATAAATTCAAATGTGTTCCTACTTTTCTACCCTCTGATGTTTTGGCAAAGTTTTATGATGGCTTCTGTAAAAGGCAGTTATGGCCACTTTTTCATTACATGTTACCATTTTCAACCGCTAAGAGCCACCGTTTTGATCGATCTTTATGGGAAGCCTATGTGCTAGCAAATAAGCTATTTTTTCAAAAGGTAGTTGAAATAATAAACCCAGAAGATGATTTTATTTGGGTTCATGATTATCATTTGATGGTGCTGCCAACCTTTATAAGAAGGCGCTTTAACAGGGTTAAACTGGGATTTTTCCTGCATAGTCCCTTTCCTTCATCAGAGATATATAGGACTCTTCCTGTCAGGGAGGAGATACTTAAAGCATTACTCAACTCTGATATCATTGGATTCCACACGTTTGACTATGCTCGTCATTTCCTTTCTTGCTGTAGTCGTATGCTGGGTCTGGAGTATCAGTCAAAGAGGGGATATCTAGGATTGGAATATTATGGAAGGACTATCAGTATTAAGATTATGCCTGTAGGAATTCACATGGGTCGAATTGAAACCGTTATGAAGATGGCAGATGAGGAGTGCAAGGCAAGGGAGCTCAAACAGCAATTTGAAGGGAAAACTATTTTGCTTGGTGTTGATGATATGGACATTTTTAAAGGAATTAATTTGAAGATTTTGGCTATGGAGCAAATGCTCAAACAACACCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGGTTGTAAATCCTGCAAGGGGAAAAGGGATACATCTAGATGAGATACGTGCTGAAATAGAAGAAAGCTGCAGCAGGATTAACAGAATGTATGGACGGCCTGGTTATGAACCAATTATTTTTATTGATAGATCAGTTTCAGTTGCTGAAAAGGTTGCCTATTACAGCCTTGCTGAGTGTGTTATTGTCACAGCTGTGAGAGATGGGATGAATCTAACTCCTTATGAATATATTGCTTGTAGACAGGGAATATCTGGTAATGGTTCATGTTCCGATATTACAAGCCCAAAGAAGAGTATGTTAGTAATATCAGAATTTATTGGGTGTTCTCCATCACTCAGTGGGGCTATACGTGTCAATCCATGGAATGTTGAGGCCACTGCAGAGGCAATGAACGAGGCTATCTCAATGAGTGATGGAGAGAAGCAGTTGCGGCATGAAAAGCACTACCGGTATGTTAGCACACATGATGTAGCATATTGGTCACGTAGTTTCTTGCAGGACATGGAGAGGGCTTGCGCTGACCTTCTAAGAAAAAGATGTTGGGGAATTGGTCTTAGTTTTGGATTTAGAGTTGTAGCACTTGACCCAAATTTTCGTAAGCTCTCAATTGATGCTATGGTTTCATCTTACAAGAGGGCAAGGAGTAGGGCCATTTTGTTGGACTATGATGGTACGGTGATGCCACAGAATTCCATTAATAAGAGTCCAAGCAATGAGGTTATCTCTCTTTTGGACACGCTTTGTGCGGACCCGAGAAATGTAGTTTTCATTGTTAGCGGGAGGGGGAGGAATAGCTTAAGTGATTGGTTCTTACCCTGCAAAAATCTGGGAATTGCCGCAGAACATGGTTACTTTTTGAGATGGTCGCAAAGTGCACAATGGGAAATTTGTGGTAAGAACATGGACTTTGGATGGATGCAGATTGCTGAACCCGTGATGAAACTCTACACAGAGGCAACTGATGGTTCCAACATTGAAACAAAGGAAAGTGCTTTGGTCTGGCAATACCGGGACGCAGATCTTGGTTTCGGATCTTCTCAAGCTAAGGAAATGTTGGATCATCTAGAAAGTGTTTTAGCCAATGAGCCCGTTGCCGTGAAGAGTGGCCAGTTCATTGTTGAAGTAAAACCCCAGGATGTGAGCAAAGGCTTAGTTGCCGAAAGGATATTTTCATCAATGGCAGAGAATGGCAAACAGGCTGATTTTGTGTTGTGTGTTGGTGATGATAGATCAGATGAAGACATGTTTGAAATAATCAGTAGTTCAATCTCAAGAAATATTCTTTCAGCCAATTCTTCTGTATTTGCCTGCACAGTTGGACAAAAACCAAGCAAAGCTAAGTATTATCTGGATGATACTACTGAAGTAATAAGCATGCTTGAATCTTTGGCAGAAGAATCAGATTCTTCACCCGACTTAGAAGAAATTGGAGATTCTTTTCAAAGGCAAGTGAGATTATCATCCTGA	2598	0.4111	MMSRSYTNLLDLASGNFPAMGNSFKERRRMPRVMSVPGIVTEVDDDQAVSVSSDNPSTISTDRMIIVANQLPLKAKRREDNQGWNFSWNEDSLLLQLKDGLPEEMEVLYVGSLRVDIDPAEQDDVSQYLLDKFKCVPTFLPSDVLAKFYDGFCKRQLWPLFHYMLPFSTAKSHRFDRSLWEAYVLANKLFFQKVVEIINPEDDFIWVHDYHLMVLPTFIRRRFNRVKLGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIETVMKMADEECKARELKQQFEGKTILLGVDDMDIFKGINLKILAMEQMLKQHPKWQGRAVLVQVVNPARGKGIHLDEIRAEIEESCSRINRMYGRPGYEPIIFIDRSVSVAEKVAYYSLAECVIVTAVRDGMNLTPYEYIACRQGISGNGSCSDITSPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMSDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACADLLRKRCWGIGLSFGFRVVALDPNFRKLSIDAMVSSYKRARSRAILLDYDGTVMPQNSINKSPSNEVISLLDTLCADPRNVVFIVSGRGRNSLSDWFLPCKNLGIAAEHGYFLRWSQSAQWEICGKNMDFGWMQIAEPVMKLYTEATDGSNIETKESALVWQYRDADLGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAERIFSSMAENGKQADFVLCVGDDRSDEDMFEIISSSISRNILSANSSVFACTVGQKPSKAKYYLDDTTEVISMLESLAEESDSSPDLEEIGDSFQRQVRLSS	865

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu03g01561	865	Pfam	Trehalose-phosphatase	596	830	IPR003337	GO:0003824\|GO:0005992
	Adu03g01561	865	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	595	797	IPR006379	-
	Adu03g01561	865	Gene3D	Glycogen Phosphorylase B;	317	530	-	-
	Adu03g01561	865	TIGRFAM	T6PP: trehalose-phosphatase	590	841	IPR003337	GO:0003824\|GO:0005992
	Adu03g01561	865	Gene3D	-	721	852	IPR023214	-
	Adu03g01561	865	Gene3D	-	592	695	IPR023214	-
	Adu03g01561	865	SUPERFAMILY	HAD-like	593	841	IPR036412	-
	Adu03g01561	865	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	63	549	-	-
	Adu03g01561	865	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED	1	853	-	-
	Adu03g01561	865	CDD	HAD_TPP	594	833	-	-
	Adu03g01561	865	Gene3D	Glycogen Phosphorylase B;	56	316	-	-
	Adu03g01561	865	CDD	GT20_TPS	63	546	IPR001830	GO:0003824\|GO:0005992
	Adu03g01561	865	Pfam	Glycosyltransferase family 20	63	546	IPR001830	GO:0003824\|GO:0005992
	Adu03g01561	865	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	853	IPR001830	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu03g01561	Adu-Chr3	24666028	24670494	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu03g01561	1	847	Trehalose Biosynthesis Gene Families	AT1G06410	77.332	0.0	1381

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu03g01561	K16055		-	gmx:100800847	1573.14