LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu03g01538	ATGAGTTCAGATTATCAAAAAACTAATGATGCTGGAATCCCAGAAACTGATGGCAATGTAAGCTGGAATTTCAATTCATTAGTAGGCCTCTTTTTCCCAGCTGTGACAGGAATAATGGCAGGTTCTAATAGATCAGCTTCTCTAAAAGATACTCAGCAATCAATTCCTATTGGGACATTATCTGCAACGCTTATTGCTACTTCTCTGTATTTTATTTCTATGTTATTTTTTGGCGCTGTTGCCACCAGAGAGAAGCTTTTAACAGACAGGCTACTAACGGCTACAGTCGCCTGGCCTTTTCCTTCACTAATTAAAATTGGGATTATTCTTTCAACTTTGGGTGCTGCTCTTCAGAGTCTGACCGGTGCCCCACGTCTGCTTGCAGCAATAGCCAATGATGATATTTTACCTATTCTGCGCTACTTTAAAGTTGCAGATGGCAGTGACCCTTTTCACTGCTATCCTATGTGTTGGCAACCTCGTTGGAAATTTCATCATTGGTTTCTCTCTCTTGTTGGAGCATTACTTTGCATTGTGATTATGTTCCTGATCTCGTGGTCATTCACTGTGGTGGCTTTGGCCCTTGCAAGTCTTATATATAAGTATGTGGGCCTCAAAGGAAAGGCTGGCGTCTGGGGAGATGGTTTCAAAAGTGCATATTTCCAACTAGCACTTCGGAGCCTTCGATCACTAGGAGAAAACCAAGTACCCCAGGATGAGTCACAGGATGCATTTAAAGGTGCTCAACAAAGAATTGATGATTATCTAAACAAAATGAAGGCAGCAGCAAAGAAAGATGGCACCCCACTAATGGCAGATGGTAAGCGCGCAGTTGTGAATGAGCAGCAAGTCGAGAAGTTCCTGTTCACAACGCTTAAGCTCAATTCAATAATGTTGAGATACTCAAGAATGGCTGCTGTTGTTTTGGTAAGTTTGCCTCCACCTCCACTGAACCACCCATCATATTTCTATATGGAGTACATGGATATGTTGCTGGAAAATATACCGAGGATTTTAATTGTAAGAGGATACCGTAGAGACGTTGTAACTCTATTCACATAG	1062	0.4181	MSSDYQKTNDAGIPETDGNVSWNFNSLVGLFFPAVTGIMAGSNRSASLKDTQQSIPIGTLSATLIATSLYFISMLFFGAVATREKLLTDRLLTATVAWPFPSLIKIGIILSTLGAALQSLTGAPRLLAAIANDDILPILRYFKVADGSDPFHCYPMCWQPRWKFHHWFLSLVGALLCIVIMFLISWSFTVVALALASLIYKYVGLKGKAGVWGDGFKSAYFQLALRSLRSLGENQVPQDESQDAFKGAQQRIDDYLNKMKAAAKKDGTPLMADGKRAVVNEQQVEKFLFTTLKLNSIMLRYSRMAAVVLVSLPPPPLNHPSYFYMEYMDMLLENIPRILIVRGYRRDVVTLFT	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu03g01538	353	Gene3D	Amino acid/polyamine transporter I	5	210	-	-
	Adu03g01538	353	PANTHER	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	3	151	IPR004842	GO:0006811\|GO:0015377\|GO:0016021
	Adu03g01538	353	PANTHER	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	157	236	IPR004842	GO:0006811\|GO:0015377\|GO:0016021
	Adu03g01538	353	Pfam	Amino acid permease	23	146	IPR004841	GO:0016020\|GO:0055085
	Adu03g01538	353	PANTHER	CATION-CHLORIDE COTRANSPORTER 1-LIKE ISOFORM X1	237	352	-	-
	Adu03g01538	353	Coils	Coil	245	265	-	-
	Adu03g01538	353	Pfam	Solute carrier family 12	234	352	IPR018491	GO:0006811\|GO:0016020\|GO:0022857
	Adu03g01538	353	PANTHER	CATION-CHLORIDE COTRANSPORTER 1-LIKE ISOFORM X1	3	151	-	-
	Adu03g01538	353	PANTHER	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	237	352	IPR004842	GO:0006811\|GO:0015377\|GO:0016021
	Adu03g01538	353	PANTHER	CATION-CHLORIDE COTRANSPORTER 1-LIKE ISOFORM X1	157	236	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu03g01538	Adu-Chr3	24228913	24234729	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu03g01538	228	353	Inorganic Solute Cotransporters	AT1G30450	67.460	9.76e-50	176

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu03g01538	K14427		-	gmx:100795205	387.111