Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01447 ATGGGCCACCAATTGGAAGAAATGGAAGATGGCATCATGGAATATGCTGTTATCCATCAATGCTTCCTCACTCAGCCACTCCTCAGTTCGTCGTCACTCAGCCACTCCTCGACGGCCTCAGTTCCTCAGTTCCTGCGTTCCTCACGGAGTCACCGTCAGTTCCTCACCGAGTCACCGTCACTCTCAGTCTCTCAGTCGGTCATCCTCATTCCTCAGCCCCTCACCGTCACTCTCAGTCTCTCAGTCTCTCACTTCCATCGTCCCTCACCGTTTATAGCCACCGCTGCTGCTCCGTCTGGCCGTCGTCGCTGCTGCCTGCTAGTCTCGGTCCTGGGCTCCTGGGTCTTGTCCTCTGACTCTGCTGGTCTCGCTCTCCATCACGGGCTCACGGCTGCTCCTCGCCTCATCTGTGGCTCTGTCCTGGTCCTCGTCTCCTCTGGAAATATGAATTCTGAAACTGTGAGTAACCTTGTTACTACTGGAGTTGGTTCTGAGGCTGCTCCGGTCGAGGTTGATGAACCTAGTTTGAAAAGGCTGAGACCAGCAACCTCTGATGTTTGGAATTTTTTCAAAAAGCTCGGTCCAGATAAGGATGGAGTAGAACGTGCTGAGTGTAAAGGATGCAAGAAAGTGTTTAAAGCTGGAGGTAAGCGATATGGCACTTCTACTATAAAACGGCATCTTGATAGTTGTACTCAAATTAAGCATGAAGATATTGGTCAGACTATAGCAGAATTGCAACTTAAAATGGGTTCACTTAAGATTGATTCAGGAGTGGCTAGAGATATGTTTGCTGGATTTGAGTTCGTACCATTAGGCGATCCAGAGACATGGCCTGCTTATCCGGGACCGACATTGATTGCTAACCCCGCCTTGCGGCGAACGTCGAAAGACAAGGTCATAGTTGGAGTCGATGTTCTCAGCGTGCTGGACCGAGTGGAGTTGGTGATGATGCTAGTCTCTAGATCTTTGGGATTCAGGAGAAACGGAGAAAGAGACCCCTCCCCAGGGAACGCTGACATTTGCGCGCCTTGTCCAATCCAAACCTCATTCCATGTCACTCCACGCTTTCAAGGAAACTCTACTAAGACCTTGCACCACAACCCAACAACAACAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTATCAATTTCTCAAAGCCAAACACGCCCTTACTCCTTTCTTCACGATTTCAGCTCCACAATTCGGTTAAGAAGCGAGAACCGGAAGAGAAAGAAGCTGATGATGGTGATGACGAGGATGGAGAAGAACAGGAGGAGCTGCAGGTGAAGAGGGGAAAATTCGGAATAGCTAAAATTTCACAATTTCAGTTTGATCACACTGGACCGTTTGAGCCTCTTGTCCTTTCTTCAGATGCAGAAGTTCCAGTCATTCAGGTTCCCGCAACTATAAATTGTAGACTACTTGAGCATCAAAGAGAGGGAGTGAGATTTCTGTATGGTTTGTATAAAAACAATCATGGTGGTATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCTATCTTTGGTAAGGAAAGAGACTCTATGCTGGGTGAAAATGACGAAGAGAAGAGAGACCCTGTATTGATAATCTGTCCAACTTCTGTCATTCATAATTGGGAGAGTGAGTTCTCTAAATGGGCTAATTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATCTGATACATGAGAAACTAGAAGCAAATGGAGTGGAGATACTTATTACAAGTTTTGACACTTACAGAATTCACGGAAGTTCCTTGTCAGATTTCGAATGGGGCATTGTGATTGTTGACGAGGCTCACCGGCTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTTAGACGTTATGGTCTTACAGGGACCATAATGCAAAATAAGATAATGGAGTTGTTTAATCTCTTTGACTGGGTTGCACCTGGATCACTTGGGACACGGGAGCACTTTCGTGAGTTCTATGATGAACCCCTTAAACATGGTCAGAGGTCATCTGCTCCTGACAAGTTTGTCCAAATTGCTAATAAAAGAAAACAACACCTTGTGAATGTTCTTCATAAATATTTGTTGAGAAGGACAAAGGAAGAGACAATTGGACATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCCATGAGTGATTTGCAAAGACGTGTTTACAAGAGAATGTTACAGCTTCCTGATATCCAATGCCTTATAAACAAGGACCTGCCTTGTAGTTGTGGTAGCCCACTTACACAAGTTGAATGTTGTAAGAGGACAGTACCAAATGGAATTATTTGGCCTTACCTTCACCGAGATAACCCTGATGGTTGTGATTCATGCCCTTTCTGCATTGTCCTTCCGTGCCTTGTCAAGCTTCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGAGAAGCAAGGCAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCTCTGATATTGATTTGGTTGGCGGAAATATGCAGAGTGAGAGTTTCATGGATCTAAGTGATGTGAAACATTGTGGAAAAATGCGAGCACTTGAAAAACTTCTGTACTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCAGTGAGGATGCTTGACATACTGGAGAAATTTCTCATACGGAAAGGCTACTGCTTCTCAAGACTTGATGGGTCTACTCCGACAAATTTGCGCCAGTCTTTAGTTGATGATTTCAACTCCAGTCCTAGCAAACAAGTATTTTTGATATCAACTCGTGCCGGTGGGCTTGGGTTGAACCTTGTCAGCGCAAACCGGGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCCCAGGACAGGTCCTTTCGTTTTGGGCAGAAGCGACATGTTCTGGTGTTCCGTCTTCTTGCAGCCGGTTCGCTTGAAGAACTTGTTTATTCTCGTCAGGTGTATAAGCAGCAACTTTCAAACATTGCTGTCTCAGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGGGATTTATCTGACAAGCTATTTACTAGTGAAATCATTAAACTGCATGAAATGGGAAAGGAACATCACAATACAATAGAACAGGAAAAAGAAAATCTTTTAGAAGAAACTGATTCTCTAAGATCGGCGTCTGACACTGAAATATGTGCTGGAACTGCAAGCAACGTAGCAAGTAAACCAGATTTTGAAGACCTTGGAATTGTGTATGCTCATCGAAATGAAGACATTGTCAACTGTGGACCTGTGATTCAGGGGAAGATAGATAGCAGCATCCCTTCAAAGAGTGATAGCTTAGTCAAGCCAAGCATCTCTTCAGTCAACCAAAGAAATAAACCAGATTGTGTACCTAAAAAACAGAAAGCTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGCCTGCTTGCACATTCTATGGGCATGGAAGAGCTTGCATTTAGCAAATGGTTACTATCAGCAACTCCTAAGGAGAGGGAGGAAGTGCTTCGAGACTTCAAGAAGAAAAAGAAGATGCCTAATGGTTAA 3660 0.4391 MGHQLEEMEDGIMEYAVIHQCFLTQPLLSSSSLSHSSTASVPQFLRSSRSHRQFLTESPSLSVSQSVILIPQPLTVTLSLSVSHFHRPSPFIATAAAPSGRRRCCLLVSVLGSWVLSSDSAGLALHHGLTAAPRLICGSVLVLVSSGNMNSETVSNLVTTGVGSEAAPVEVDEPSLKRLRPATSDVWNFFKKLGPDKDGVERAECKGCKKVFKAGGKRYGTSTIKRHLDSCTQIKHEDIGQTIAELQLKMGSLKIDSGVARDMFAGFEFVPLGDPETWPAYPGPTLIANPALRRTSKDKVIVGVDVLSVLDRVELVMMLVSRSLGFRRNGERDPSPGNADICAPCPIQTSFHVTPRFQGNSTKTLHHNPTTTIFFFFFFFFFFFFFSINFSKPNTPLLLSSRFQLHNSVKKREPEEKEADDGDDEDGEEQEELQVKRGKFGIAKISQFQFDHTGPFEPLVLSSDAEVPVIQVPATINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAIFGKERDSMLGENDEEKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGANRDLIHEKLEANGVEILITSFDTYRIHGSSLSDFEWGIVIVDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSSAPDKFVQIANKRKQHLVNVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDLQRRVYKRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPNGIIWPYLHRDNPDGCDSCPFCIVLPCLVKLQQISNHLELIKPNPKDDPEKQGKDAEFAAAVFGSDIDLVGGNMQSESFMDLSDVKHCGKMRALEKLLYSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVLVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIKLHEMGKEHHNTIEQEKENLLEETDSLRSASDTEICAGTASNVASKPDFEDLGIVYAHRNEDIVNCGPVIQGKIDSSIPSKSDSLVKPSISSVNQRNKPDCVPKKQKAPLIDERKRTQYSLLAHSMGMEELAFSKWLLSATPKEREEVLRDFKKKKKMPNG 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01447 1219 Gene3D - 458 712 IPR038718 -
Adu03g01447 1219 SMART ultradead3 476 671 IPR014001 -
Adu03g01447 1219 SMART helicmild6 898 981 IPR001650 -
Adu03g01447 1219 CDD SF2_C_SNF 863 992 - -
Adu03g01447 1219 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 609 618 IPR002464 -
Adu03g01447 1219 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 492 663 IPR014001 -
Adu03g01447 1219 ProSiteProfiles Zinc finger BED-type profile. 181 243 IPR003656 GO:0003677
Adu03g01447 1219 PANTHER SNF2/RAD54 FAMILY MEMBER 412 1209 - -
Adu03g01447 1219 Gene3D - 725 1093 IPR027417 -
Adu03g01447 1219 MobiDBLite consensus disorder prediction 1138 1157 - -
Adu03g01447 1219 SMART bed5 181 234 - -
Adu03g01447 1219 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 412 1209 - -
Adu03g01447 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 1037 IPR027417 -
Adu03g01447 1219 Pfam Helicase conserved C-terminal domain 869 981 IPR001650 -
Adu03g01447 1219 Pfam SNF2-related domain 496 753 IPR000330 GO:0005524|GO:0140658
Adu03g01447 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 713 IPR027417 -
Adu03g01447 1219 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 872 1025 IPR001650 -
Adu03g01447 1219 MobiDBLite consensus disorder prediction 1138 1161 - -
Adu03g01447 1219 SUPERFAMILY beta-beta-alpha zinc fingers 184 237 IPR036236 -
Adu03g01447 1219 MobiDBLite consensus disorder prediction 410 433 - -
Adu03g01447 1219 Coils Coil 1068 1088 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01447 Adu-Chr3 21756194 21770432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01447 499 753 RAD5 or RAD16-like Gene Family AT5G43530 25.606 7.25e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu03g01447 SNF2_N 6.7e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01447 K20098 - gmx:100781003 1346.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g01447 03 21756194 21770432 Adu03g01447 03 21756194 21770432 ECH