Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu03g01406 | ATGACCTCAGATCAGTACTTCAGGGATGCTGCTCGCGAAATCAGTACCTTCGAAGACATACCCTCCTTGGAAAAGTGGAAATCTTCCACCAATGCTGGTGTAGATTCCGATCGAAATGCCACCGAAGGATTCGACTGCAACATCTGCCTAGAATGTGTGCAAGAACCGGTAGTTACCCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATATCCAAACCATCTCTTCCAAAAACATGGAGCAGCAGAAGCCACAATGTCCTGTGTGCAAATCAGAAGTTTCTCAATCCTCCCTAGTTCCACTCTACGGCCGGAACCAAGTCGCAACGCCGTCCGGCAAAAATGCTCGCCAATTAGGCTCTTCGATACCTAGAAGACCCCCTGGCCGGAGACCATACAATCCTGCAGCATCTGTTTTACAATCTACTTCTGAAACTAATCAACCTCGGCCATTCGACTCGATTCAAAGCAGTTACACTTCAACATCTGGAATTTTTGGTGAGATGATATATGCAAGGGTGTTTGGTAATCAATTGAGGAACATGTATACATATCCAAATTCTTATTGTCTTTCAGGGAGTAGCAACCCAAGGATCAGAAGGCAATTGATGGAAGCTGATGAATCACTCAGTAGAATATGTTTTTTCCTCTTCTGCTGCTTGGTTATGTGTCTTCTCTTGTTCTGA | 699 | 0.4521 | MTSDQYFRDAAREISTFEDIPSLEKWKSSTNAGVDSDRNATEGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHIQTISSKNMEQQKPQCPVCKSEVSQSSLVPLYGRNQVATPSGKNARQLGSSIPRRPPGRRPYNPAASVLQSTSETNQPRPFDSIQSSYTSTSGIFGEMIYARVFGNQLRNMYTYPNSYCLSGSSNPRIRRQLMEADESLSRICFFLFCCLVMCLLLF | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu03g01406 | 232 | Pfam | RING-type zinc-finger | 46 | 92 | IPR027370 | - | |
| Adu03g01406 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 125 | IPR013083 | - | |
| Adu03g01406 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 46 | 95 | IPR001841 | - | |
| Adu03g01406 | 232 | SMART | ring_2 | 46 | 94 | IPR001841 | - | |
| Adu03g01406 | 232 | SUPERFAMILY | RING/U-box | 37 | 101 | - | - | |
| Adu03g01406 | 232 | ProSitePatterns | Zinc finger RING-type signature. | 61 | 70 | IPR017907 | - | |
| Adu03g01406 | 232 | MobiDBLite | consensus disorder prediction | 140 | 159 | - | - | |
| Adu03g01406 | 232 | CDD | RING-HC_AtRMA_like | 44 | 96 | - | - | |
| Adu03g01406 | 232 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RMA1 | 3 | 232 | - | - | |
| Adu03g01406 | 232 | MobiDBLite | consensus disorder prediction | 114 | 159 | - | - | |
| Adu03g01406 | 232 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 3 | 232 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu03g01406 | Adu-Chr3 | 20954820 | 20957680 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Adu03g01406 | 44 | 232 | C3H Transcription Factor Family | AT4G28270 | 42.784 | 2.06e-46 | 151 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu03g01406 | K10666 | - | gmx:100785491 | 265.003 |