Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01397 ATGGGTGTTCTTCACTTTACACTCCTCTGCTTCATTTTACTACATTCATGGAAGATTGCAGCTTATAATGATGAAGATTGGAAGAAAGCCACTGCAACATTCACCAAAGACACTGATGAAGGATCTCTCGTTACTGAAGGAGCTTGTGGCTATGGAGATATTCACAAGGCAAGTTATGGAAAACACAGTGCTGGATTGAGCAGCATTTTGTTCAACAGAGGGAGTGCTTGTGGGGCTTGCTATGAAATCAGGTGTGTTGACCACATCTTGTGGTGTGTTATGGGAAGCCCTTCTATTGTTGTCACTGCTACAGATTTCTGTGCTCCAAATTATGGCCTCTCAGTTGATTATGGTGGATGGTGCAACTTTCCAAGAGAGCATTTTGAGATGTCACATGCCGCATTTGCCCAAATTGCAAAGAGTAAAGCTGATATTGTTCCAGTTCAGTATAGAAGAGTGAAGTGTCAAAGAAGTGGTGGCCTGAAATACACAATGAGTGGAAATTCTCACTTCTATCAAGTTCTGGTAACCAATGTAGGACTTGATGGTGAGGTGGTTGCTATGAAAGTGAAGGGATCTAGAACAGGGTGGATCCCAATGGCAAGGAACTGGGGGCAAAACTGGCATTGCAATGTCAACCTTCAGCGACAACCTTTGTCATTCGAGATTGTGGATGCGTCAAATGTGATTTTGCAAATCATATAG 705 0.4284 MGVLHFTLLCFILLHSWKIAAYNDEDWKKATATFTKDTDEGSLVTEGACGYGDIHKASYGKHSAGLSSILFNRGSACGACYEIRCVDHILWCVMGSPSIVVTATDFCAPNYGLSVDYGGWCNFPREHFEMSHAAFAQIAKSKADIVPVQYRRVKCQRSGGLKYTMSGNSHFYQVLVTNVGLDGEVVAMKVKGSRTGWIPMARNWGQNWHCNVNLQRQPLSFEIVDASNVILQII 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01397 234 SUPERFAMILY Barwin-like endoglucanases 26 178 IPR036908 -
Adu03g01397 234 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 160 IPR007112 -
Adu03g01397 234 Gene3D - 160 233 IPR036749 -
Adu03g01397 234 PANTHER EXPANSIN-A15 4 227 IPR002963 GO:0009664
Adu03g01397 234 SMART dpbb_1 63 150 IPR007112 -
Adu03g01397 234 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Adu03g01397 234 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Adu03g01397 234 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Adu03g01397 234 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Adu03g01397 234 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Adu03g01397 234 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Adu03g01397 234 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Adu03g01397 234 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Adu03g01397 234 Pfam Expansin C-terminal domain 163 227 IPR007117 -
Adu03g01397 234 Pfam Lytic transglycolase 64 150 IPR009009 -
Adu03g01397 234 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Adu03g01397 234 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Adu03g01397 234 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Adu03g01397 234 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Adu03g01397 234 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Adu03g01397 234 Gene3D - 13 156 IPR036908 -
Adu03g01397 234 SUPERFAMILY PHL pollen allergen 157 229 IPR036749 -
Adu03g01397 234 PANTHER EXPANSIN-A20 4 227 - -
Adu03g01397 234 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 228 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01397 Adu-Chr3 20782327 20785311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01397 9 224 Expansin Gene Family AT4G38210 62.212 1.10e-105 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01397 - - ahf:112789777 465.692