Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01338 ATGGGAAGAGTTCCTTGTTGTGACAAGAATGGTCTCAAGAAGGGTCCATGGACCCCCGAGGAAGATCTTAAACTTACCAACTACATTCAGACTCATGGCCCAGGAAATTGGCGCACCCTTCCCAAGAATGCTGGTCTTCAAAGATGTGGCAAGAGTTGTCGCCTAAGATGGACAAATTACCTGAGACCCGATATCAAGAGGGGAAGATTCTCTTTTGAAGAAGAGGAGGCTATTATTCAGTTGCATAGTGTATTGGGAAACAAATGGTCGGCAATAGCAGCAAGACTTCCAGGAAGAACTGACAACGAAATCAAGAACTATTGGAACACTCACATTAGGAAGAGGCTACTTCGGATGGGAATTGACCCAATTACCCATGCCCCACGCCTTGATCACCTTCTTGATGTGTCCTCCATTCTAAGGACACTCGTTGCAAACCCTTCTTCTCTTTTGAGTCTCCAAGCCCTATTAACTCACCCTCAACCCTTTTTATTCAACCCTGAATTGCTTAAGCTATTAGCAGCTGCTACAACTCCTTCAACTCTTACGTCCACAAAAAATGACCAAAATAACCCTGATTTTGCATCGTCATCCTCATCTTCGTCGCAGAATATTAATAACAATAATAATGATATTCTACAACAAATCCTTAGTGGAAAGCTCAATCAGTTAGTTGCACCAAAAGAAGAGTTTGTTACTCATGGTCATTTTGAGAGACCAATGTCAACAATTCAAGGTAATGTGGAGGGCTTAATGGAAAATAATAATAATAATTTTAATGTTTTGCAACAAGATCAAATTGGTTTCATAGGGAACCAGGATTTGGACAATAATAATATTGCAAACCAAAATAGTTTTGGGTATGATTCGGTGCTGTCAAGTCCAAATCAGATGAATTCATCATCCACCTATGTGAATAGCAGTGCAGAGGAAGAAAGCTATTGCAGTGAATTATTCAAGTTTCAGATTCCAGACACTCTGGATATTAGTGATTTTATGTAA 1002 0.4002 MGRVPCCDKNGLKKGPWTPEEDLKLTNYIQTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPITHAPRLDHLLDVSSILRTLVANPSSLLSLQALLTHPQPFLFNPELLKLLAAATTPSTLTSTKNDQNNPDFASSSSSSSQNINNNNNDILQQILSGKLNQLVAPKEEFVTHGHFERPMSTIQGNVEGLMENNNNNFNVLQQDQIGFIGNQDLDNNNIANQNSFGYDSVLSSPNQMNSSSTYVNSSAEEESYCSELFKFQIPDTLDISDFM 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01338 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Adu03g01338 333 CDD SANT 69 112 IPR001005 -
Adu03g01338 333 SMART sant 66 114 IPR001005 -
Adu03g01338 333 SMART sant 13 63 IPR001005 -
Adu03g01338 333 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Adu03g01338 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Adu03g01338 333 CDD SANT 16 61 IPR001005 -
Adu03g01338 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Adu03g01338 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Adu03g01338 333 Gene3D - 13 66 - -
Adu03g01338 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 328 - -
Adu03g01338 333 MobiDBLite consensus disorder prediction 181 208 - -
Adu03g01338 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Adu03g01338 333 PANTHER TRANSCRIPTION FACTOR MYB41 1 328 - -
Adu03g01338 333 Gene3D - 69 116 - -
Adu03g01338 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01338 Adu-Chr3 19664613 19666593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01338 1 333 MYB Transcription Factor Family AT4G21440 48.000 2.14e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu03g01338 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01338 K09422 - gmx:102668351 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01620 08 26858415 26859528 Adu03g01338 03 19664613 19666593 PCT