Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01325 atgagtccatcttttgatgctattagcaagatagttcctccaagagaggcttggaggcttaaagtgagggtaattagggcttggattgttccaagctttggaaatccagattctccaaattcaatggagctcattttggtggatgaaaattcaaacaaaatccaggccactataaggaagcaacttatcaacaggtttaaagataatattattgaagggaattgctacaagatgtgttatttctctgttgttccaaatcatggctcttatagagctacaaaacatgagtttaagcttacattcctcttccgaacaatagtaacaactttaccagatgatatcataccaagagtctgttttactctatatccttttgaggagatattgcaaatgagtcaagatcatgattatttagttgatgttattgggttgctgactttagttggagaggaaaaaagttatgataaagatggaaaaacaatcaagatggttgttgtggagctttcttctcaaaagatggtgcttaggtgcgccctgtttggagaatatgtggatcaactaaatcattttctttcttctggttatgttgaacaaccagtagtgattcttcaacttgccaaagttaagctttttcgagggcaacctgggttacaaaatgtcatgaaagcaacaaaaatatatcttaatcctgacttggcagctgttgttgatttcaggaagagcgtggtagagcaagggataaatgggacccagccactgtttattgctaatgaaggaaaaactatctcattggaggatgacttcatgaggttgactaagaaatctacaatagatgagttgcaagaaaacaaggaggatggaacctttgtcattttaggtactatcactgatgttgtagaagaggggtgctggtggtattctacctgtgtttgtgggaagacagtacatcctgaatctggtgtttacttttgtgatatgtgcatgcatcatgtgacaaatgtgatcccaagGTATAGGCTCAAGGTAGTTGTATCagatgaaactggacagggtatatttgtcctctttgatcgtgaaacaacctacttggttaaaaaaacatgtgctgacctatttaatgaggtacataaagattcaaaggttctctgtggggatgactaccctatcatttttagaaatttggagggtaaaaaagtcttgctgaaagtggatactaagtctcttggtgttgatagatattttggaacttttcgtgtgaagaggatttgtgatgatgctgcaattatttcaatgtttgaacttGCTCAGACTGAGATAACACCTTTGAAGGATGCACCTGTTCCTGTGTTTGGTCCTGAGTTGGGTGAAACTTCTAATACAAAATGTTTAGAGAATACTGTCATGTCATCTTTTCTTCAAAAAGAAGCAAATGTTGCTGGACTTGATGATATACACTTAGATATGGAAGGTGTTAAGGAGGTTGATATTCAAGATCATTCTGTTGATAGTGATGAAAATGTAGTGCTGTCGGATGATATTGGCTCACTTATTCGGTCTGATGTTGATGAAACTCAGGATTTGCTCTCACACCTTTTAGATGACTCAAGGAAAGTTAATGTGCCTAATGTTGTTCCCAAAGATGCAGTATTTTTAAAGGTGAAGAGGAATCTTGAGGCTGATTTTGATAAGGAACTTGAGGATACTGTTGCTCATTGCTCTAAAATAATCAAGATTGAAGATAGTTAA 1746 0.0997 MSPSFDAISKIVPPREAWRLKVRVIRAWIVPSFGNPDSPNSMELILVDENSNKIQATIRKQLINRFKDNIIEGNCYKMCYFSVVPNHGSYRATKHEFKLTFLFRTIVTTLPDDIIPRVCFTLYPFEEILQMSQDHDYLVDVIGLLTLVGEEKSYDKDGKTIKMVVVELSSQKMVLRCALFGEYVDQLNHFLSSGYVEQPVVILQLAKVKLFRGQPGLQNVMKATKIYLNPDLAAVVDFRKSVVEQGINGTQPLFIANEGKTISLEDDFMRLTKKSTIDELQENKEDGTFVILGTITDVVEEGCWWYSTCVCGKTVHPESGVYFCDMCMHHVTNVIPRYRLKVVVSDETGQGIFVLFDRETTYLVKKTCADLFNEVHKDSKVLCGDDYPIIFRNLEGKKVLLKVDTKSLGVDRYFGTFRVKRICDDAAIISMFELAQTEITPLKDAPVPVFGPELGETSNTKCLENTVMSSFLQKEANVAGLDDIHLDMEGVKEVDIQDHSVDSDENVVLSDDIGSLIRSDVDETQDLLSHLLDDSRKVNVPNVVPKDAVFLKVKRNLEADFDKELEDTVAHCSKIIKIEDS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01325 581 SUPERFAMILY Nucleic acid-binding proteins 275 436 IPR012340 -
Adu03g01325 581 Gene3D - 6 112 IPR012340 -
Adu03g01325 581 Gene3D - 264 437 IPR012340 -
Adu03g01325 581 CDD RPA1_DBD_A_like 19 107 - -
Adu03g01325 581 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Adu03g01325 581 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Adu03g01325 581 Gene3D - 114 250 IPR012340 -
Adu03g01325 581 PANTHER REPLICATION FACTOR A 1, RFA1 22 372 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu03g01325 581 CDD RPA1_DBD_C 274 420 IPR013955 -
Adu03g01325 581 CDD RPA1_DBD_B_like 140 242 - -
Adu03g01325 581 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Adu03g01325 581 Pfam Replication factor-A C terminal domain 291 406 IPR013955 -
Adu03g01325 581 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01325 Adu-Chr3 19304091 19306984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01325 8 349 Core DNA Replication Machinery Family AT2G06510 21.389 1.90e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01325 - - ahf:112791275 1062.37