Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01255 ATGAACTTTCAACTTCCACAACGAGATGATGATTTTGGTTATTACGGGAATAGTAGTCAGGACGATGAGAGCAGAGATAGCCGAGGTGGTGGGGCAATGGCAAGTCACAGTAATGGGAATGTGAATGCGAACGGAAGGGAGGTAAATTTGTTGAAGAGAGCATGGTCTCAAAACAGTGACGAGGAAGAAAGGAGTCGGTTTTATGGAACATGTATCACAGAGGAGCGATATAGATCGATGCTTGGAGAGCATGTCCAGAAATACAAGAGGAGGTTTAAGGACACCTCATCTACTCATGCCCAAAATCAGGTTGCTGTTCCACCTGTCCAAAGTAGCAGTGGCTCAAAAGCTCGAAAGTCTGGGAATGATCACTATGGAGGACTGCATGCTGCAGAGATTGCATCTGAATGGCTATATGATTCCAATTCTCAGAAACCAGGAAACTACCATGATGCTAATTTCCTGCAGCGATATGCCTCTGATAGGACTATGTATGAACCTGCTTCTTTGGACATTACTGATGGTATCTCTTATAAGATTCCTCCAAAATATGATAAGCTAGCTTCAATGCTGAACCTGCCAAACTTCTCAGATATCCATGTAGATGAATTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGGTGGCTACTGATAAAAGGTTCATGACTACAAACCGAGGAGGCATGGGGGAGCCTATGTCCCAATATGACTCACTTCAGGCACGCTTGAAGGCCATGTCCGCTTCTAATTCACCTCATAAGTTCAGTCTGAAAGTGTCCAATGTCGGTTTAAATTCCTTCATCCCAGAGGGGGCAGCTGGAAACATAAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAAGGTGATACTTATGAGATAATTGAGCGAAGCCTACCTAAGAAGCAAAAGGTGAAAAAAGATCCTGCTTTGATTGAGAAGGAGGAAAGGGACAGAATTGGTAAGATTTGGGTAAACATTGTCAGAAGAGACGTTCCAAAACATCATAGGAATTTCACAATTTTTCATCGAAAGCAACTAATGGATGCCAAGAGGTTCTCAGAGAATTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCACTTAGATGGACTCGGGGTGCCAGCATTCGCACCCGCAAACTAGCTAGAGACATGTTGTTTTTCTGGAAACGAGCTGATAAGGAGATGATTGAATTGAGAAAAAGAGAGGAAAAAGAAGCTGCTGAAGCATTGAGGCGTGAACAGGAGCTTCGAGAAGCTAAGAGGCAACAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTCTACAGTCACTTCATGCAGAACAAATCAAGCTTATTATCTTCAGAGGCTTTACCAATGGAAGATGAAAAAGCAGATGATCAAGATGCACTTTTTGACTCTTCAGATGCTGGCCCGATTGAGGATGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTCTGAAGGCTGCTCAAGAAGCTGTCTCCAAACAAAGAAAGTTGACAAGTGCTTTCGACAGTGAATGCCTGAGGCTGCGCCAGGCTGGTGAAGCTGATCCACTTTCACAGGAGGTAGCAGGAGCGAGTGACATTGATTTGCAAACTCCCTCAACTATGCCTGTGGCATCTACAGTTCAGACACCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTTGTTAATTGTTATGAGCAGGGTTTAAATGGCATACTTGCTGATGAGATGGGACTTGGAAAGACAATTCAGGCTATGGTATTTTTGGCCCATTTAGCTGAGGAGAAAAATATATGGGGGCCTTTTCTGGTTGTTGCACCTGCATCTGTTTTAAACAATTGGAATGAGGAACTTGAGCGCTTTTGCCCTGAACTCAAGAGACTTCCTTATTGGGGAGGTGTTGCCGAGCGATCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTATATCGTAGGGACGCTAAATTCCACATTGTCATCACTAGCTATCAGCTGTTAGTACAAGACGAGAAGTTTTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAGGCTCAAGCAATAAAAAATTCAACCAGCATAAGATGGAAGACACTCCTTAGCTTTAATTGTCGGAATCGCCTTCTTCTTACTGGCACACCTATTCAGAATAATATGGCAGAGCTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGATAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGCATTGAGAACCACGCAGAACATGGTGGCACCTTGAATGAGCATCAACTGAATAGATTGCACTCAATTCTGAAGCCTTTCATGTTGCGGCGCGTTAAAAAGGATGTAGTTTCTGAGCTGACTAAGAAAACTGAGGTTATGGTGCATTGCAAGCTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAACTTTTCGATAGTAATCGTGGGCAACTCAACGAGAAGAAAATCCTGAATCTAATGAATATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGTAGCACATACTTCTATTTTGCAGAGATTCCAAATTCCCTTCCACCTCCCCCATTTGGGGAGTTGGAGGACATATACTATCCTGGAGGTCACAACCCCATATCATATGAGATGCCAAAACTTGTCTACCAAGAGATTATGCAAAGATCTGAGACTTTCTGTTCGACTGTTGGTCATGGTGTCTGCAGAGAATCTTTTCAGAAACATTTCAACATTTTTACACCGGAAAATATTTATCGCTCTATGATCTCAGAAGGTGTGGTTGTTAATAGCGGAAACTTTGGTTTTACTCGTTTGGTGGATTTGTCTCCACAAGAGGTGACATTTCTGGCCAGTAGTTCTTTCTTGGAGAGACTATTGTTTTCTATGATGAGATGGGAACGTAAATTCCTTGATGAATTTATAGACTTTCTTATGGAGACCACAGTAAGTGATCCTGAATGTAGTTACCTGGAAAAAGGAACAGTGAGAGCTGTTACTAGAATGTTATTATTGCCATCAAGATCCGAGGCTCAGTTTCTTGAACGAAGGTTTGCAACCGGGCCCACCTGTGATCCTTTTGAGGCTTTGGTCATCTCCCATCAGCATAGACTTTTATCCAATGCAAGGCTTCTTCATGCAGCTTACACATATATCCCACCGACTAGAGCTCCACCAATTGCTGCTCATTGCCCAGATCGTAACTTCTCCTATAAAATGATTGAAGAATTGCATGATCCTTGGGTTAAGAGGTTGTTTGTAGGATTTGCGCGTACATCTGAATCTACTGGGCCTAGAAAGCCTGTTCGTTCTCCTCATCATTTAATTGAAGAGATTGATTCTGAACTACCTATTTCACACCCTGCACTTAAGTTCACACATGAAGTTTTTGGCTGTTCACCTCCGATGCATAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATACTATTGAAACGCTTGCGAGCAGGAAATCATCGTGTTCTTTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGATTATATGAACTATAGAAAATATAAGTATTTTCGACTTGACGGGTCATCTACTATTCAGGATCGCAGAGACATGGTCAAAGACTTCCAGGACAGGAGTGATGTATTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTAGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAAAGTGACTGGAATCCAACGTTGGATCTGCAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATACTTCTTAGAGCAAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGTTCTGTTGGAGGTGATCTTTTAGCTCCAGAGGATGTCGTATCTTTGCTTTTGGATGATGTCCAACTTGAACAGAAATTAAAGGAAATCCCAATTCAGGTAAAGGATAAGGAAAAGAAAAAGAAACCAACTAAGGGTATCCGTGTAAATGAAGATGGTGATGCATCTCTGGAGGATCTAACAAACTCTACAGCCCAGGGTACTACAGATTTTGATCTTCCGATGGACCCAGAGGGATCAAACGCCAGTAATAAAAAGAGAAAAGCTGCTTCCAGACCAAGGAATTCTCAAAAGCCAAGTGAATCTGGCATTATGGCTATAGATTATGAATTGGATGATAACCACCTAACTACTGAACCAGTGAGCCACAAACCAAAGAGACCCAAACGGATGAAGAATGTAAATGAAAAGTTTGAAGAGTCTTTTACTGCATCGGCTACCATATTCCCAGAGAAGACTTAA 4467 0.4184 MNFQLPQRDDDFGYYGNSSQDDESRDSRGGGAMASHSNGNVNANGREVNLLKRAWSQNSDEEERSRFYGTCITEERYRSMLGEHVQKYKRRFKDTSSTHAQNQVAVPPVQSSSGSKARKSGNDHYGGLHAAEIASEWLYDSNSQKPGNYHDANFLQRYASDRTMYEPASLDITDGISYKIPPKYDKLASMLNLPNFSDIHVDEFYLKGTLDLGSLAAMVATDKRFMTTNRGGMGEPMSQYDSLQARLKAMSASNSPHKFSLKVSNVGLNSFIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEERDRIGKIWVNIVRRDVPKHHRNFTIFHRKQLMDAKRFSENCQREVRMKVSRSLRWTRGASIRTRKLARDMLFFWKRADKEMIELRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSLLSSEALPMEDEKADDQDALFDSSDAGPIEDDPEEAELKKEALKAAQEAVSKQRKLTSAFDSECLRLRQAGEADPLSQEVAGASDIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGVAERSVLRKSINPKDLYRRDAKFHIVITSYQLLVQDEKFFRRVKWQYMVLDEAQAIKNSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTKKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYFYFAEIPNSLPPPPFGELEDIYYPGGHNPISYEMPKLVYQEIMQRSETFCSTVGHGVCRESFQKHFNIFTPENIYRSMISEGVVVNSGNFGFTRLVDLSPQEVTFLASSSFLERLLFSMMRWERKFLDEFIDFLMETTVSDPECSYLEKGTVRAVTRMLLLPSRSEAQFLERRFATGPTCDPFEALVISHQHRLLSNARLLHAAYTYIPPTRAPPIAAHCPDRNFSYKMIEELHDPWVKRLFVGFARTSESTGPRKPVRSPHHLIEEIDSELPISHPALKFTHEVFGCSPPMHNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQDRSDVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPIQVKDKEKKKKPTKGIRVNEDGDASLEDLTNSTAQGTTDFDLPMDPEGSNASNKKRKAASRPRNSQKPSESGIMAIDYELDDNHLTTEPVSHKPKRPKRMKNVNEKFEESFTASATIFPEKT 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01255 1488 CDD SF2_C_SNF 1177 1309 - -
Adu03g01255 1488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 552 798 IPR027417 -
Adu03g01255 1488 MobiDBLite consensus disorder prediction 1372 1470 - -
Adu03g01255 1488 Pfam SNF2-related domain 585 872 IPR000330 GO:0005524|GO:0140658
Adu03g01255 1488 Pfam Helicase conserved C-terminal domain 1189 1298 IPR001650 -
Adu03g01255 1488 Pfam DNA-binding domain 332 459 IPR020838 GO:0003677
Adu03g01255 1488 MobiDBLite consensus disorder prediction 97 119 - -
Adu03g01255 1488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 800 1366 IPR027417 -
Adu03g01255 1488 SMART helicmild6 1215 1298 IPR001650 -
Adu03g01255 1488 SMART ultradead3 566 761 IPR014001 -
Adu03g01255 1488 Gene3D - 1153 1404 IPR027417 -
Adu03g01255 1488 MobiDBLite consensus disorder prediction 1 45 - -
Adu03g01255 1488 PANTHER HELICASE SRCAP-RELATED 1 1475 - -
Adu03g01255 1488 PANTHER CHROMATIN-REMODELING ATPASE INO80 1 1475 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Adu03g01255 1488 Coils Coil 408 447 - -
Adu03g01255 1488 MobiDBLite consensus disorder prediction 1372 1390 - -
Adu03g01255 1488 Gene3D - 543 823 IPR038718 -
Adu03g01255 1488 MobiDBLite consensus disorder prediction 31 45 - -
Adu03g01255 1488 MobiDBLite consensus disorder prediction 94 125 - -
Adu03g01255 1488 ProSiteProfiles DBINO domain profile. 336 461 IPR020838 GO:0003677
Adu03g01255 1488 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1189 1373 IPR001650 -
Adu03g01255 1488 MobiDBLite consensus disorder prediction 1391 1405 - -
Adu03g01255 1488 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 582 753 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01255 Adu-Chr3 16716079 16733292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01255 623 871 RAD5 or RAD16-like Gene Family AT1G61140 23.548 2.32e-12 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu03g01255 SNF2_N 4.7e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01255 K11665 - gmx:100780615 2376.28