Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01217 ATGGACAAGTCTGAAATTAACAAAATGTCGTCTCAGTTTCAGCTGCTGCAACAACTTTCTGTGACCCAAAAAGTTGCAAAGTTGAAAGCATTCGAGCTAGGAATGGAGGCTCTTGGTACCGTGGATGACCTCTTGGATTTCTCATCCGACGTAGGTGAGGATAATGATGTTGTTGTTGACAGATGCAGGAAAGGATTTCCTTGTAACCCAGAATGCAAACAACCTTCATTCACTCCGTTGGCCATGGATGATCCTAACTATTCATTCTCTGAGTTCGCCGAGGAAGAGCTTGAATGGTTGTCCAATAAAGACGCATTTCCTGCTGTCGAAACATTTGTCGACATACCATCTATTCGGCCTAACATGTCAAAGCACCAAGGGACAGCCTCGGTGCTTGAATATAGAAGGAGCATCCCCAATAATAACTGCACTAACAACATTACACTCTTAAACGGCTTTGATCACCTGAAGGTCCCTGTCCGAGCAAGGAGCAAGTACCGTAGTAGGCCTCGCCTGGCTATTGCTGACGTCTCAAGTCATCAGTCCTGGTGGAGACTATCTAGTAGAGAAATTTCCGGAGCAGAAGTGATAAAAATCCCAACCATTGGGAGGAAATGTCAGCACTGTGGATCTGAAGAAACTCCACAGTGGCGATCCGGTCCGCTTGGGCCAAAAACACTTTGTAATGCCTGTGGGGTTAGGTTCAAGTCTGGTCGGCTCGTCCCGGAGTACCGTCCTGCAACCAGCCCAACTTTTCGTCACGAGTTGCATTCTAATTCCCATAGGAAGATTATCGAGATGAGGAAGCAGAAGCAAATGGGAATGGTTTGA 831 0.4657 MDKSEINKMSSQFQLLQQLSVTQKVAKLKAFELGMEALGTVDDLLDFSSDVGEDNDVVVDRCRKGFPCNPECKQPSFTPLAMDDPNYSFSEFAEEELEWLSNKDAFPAVETFVDIPSIRPNMSKHQGTASVLEYRRSIPNNNCTNNITLLNGFDHLKVPVRARSKYRSRPRLAIADVSSHQSWWRLSSREISGAEVIKIPTIGRKCQHCGSEETPQWRSGPLGPKTLCNACGVRFKSGRLVPEYRPATSPTFRHELHSNSHRKIIEMRKQKQMGMV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01217 276 Gene3D - 201 273 IPR013088 GO:0006355|GO:0008270
Adu03g01217 276 CDD ZnF_GATA 205 253 IPR000679 GO:0006355|GO:0043565
Adu03g01217 276 ProSiteProfiles GATA-type zinc finger domain profile. 200 236 IPR000679 GO:0006355|GO:0043565
Adu03g01217 276 PANTHER GATA TRANSCRIPTION FACTOR 41 272 - -
Adu03g01217 276 PANTHER GATA TRANSCRIPTION FACTOR 1 41 272 - -
Adu03g01217 276 SMART GATA_3 200 250 IPR000679 GO:0006355|GO:0043565
Adu03g01217 276 Pfam GATA zinc finger 206 239 IPR000679 GO:0006355|GO:0043565
Adu03g01217 276 ProSitePatterns GATA-type zinc finger domain. 206 231 IPR000679 GO:0006355|GO:0043565
Adu03g01217 276 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01217 Adu-Chr3 14330842 14334179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01217 202 274 C2C2-Gata Transcription Factor Family AT3G24050 83.562 5.61e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Adu03g01217 GATA 1.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01217 - - adu:107477758 539.65