Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01173 ATGCCGAGACGAATCAACAACGACAACAACAACCGTGAAGATAATTATAACGATGGAGTAGTAGCAAAAGAGGAGAATGGTGGTGAAAAGAGTTTGAGAGGGAAAACAAAGAAAGGGCCATGGACAGTTTCGGAAGATATAATGTTGAGAGAGTATGTGATGAAGTACGGTGAAGGGAATTGGAACTGTGTGCAAAAGAATTCAGGGTTGGCAAGGTGTGGCAAAAGTTGTAGGCTTAGATGGGCCAATCATCTTAGACCTAATTTGAAGAAAGGTTCATTTTCTAAAGAAGAAGAAGATTTAATTGTTCAACTTCATGCTAAACTTGGAAACAAATGGGCTCGAATGGCCGCACAGCTACCTGGGAGAACAGATAATGAAATAAAAAACTTTTGGAACACTAGAGTAAAAAGATGCCAAAGAGCTGGGTTGCCACTTTATCCACCACAAGTGTTGCATGAAGCCAATGTATACCATCTACAACAACATCTCAAACCTCAACCTTCTTCTTCTTCATCATCATCTTTCTCATTTTCTCCATTATTTATGTCTTCCTCTAACCACCAAGAAATCAATCAACTAAAGCTAATAGCCCACCCTTCTACAAATCAACATTCCTCTTGTTTATCATATAATAATCCACAACCATACCCACAATTCAAGTTTCCAAATGAAAACCCTAATATTACAAATAGTGGAAATTTAGGGTTCCCATTATCTCCTATTTCCATAACTTCCTCTTTGTTTAACCAAAGTTATAATAATGTAAATAATAACTCAAATAATGATTATTATCATTTAGGAAGCTATAACTATGGGTTCCACTCCAACAATAGTGATACTAATAATAATAATGTTAAACTAATGCCAAATTCACCATTTGAAGCACTTCCTCCTTTGATTCAAGGTTCAAATAACAATAATGAAGCCTCTTTAAGCCAATCATCACCACCACTTAGCTCAACAACACCTACTTCATCTCATGCTAGCGGTAATAATGGCTACTTAATAGGAGGAGGAGCTTCAAACATGGCTACAAATGGTGACGGCGGCCGCTCCGGAGTTGCGCCGCTTTCGCCGCCTCAAGAAAATGGTGGTGGTGGCTTGTTGGGTGCAGTTTTGGTAGAAGCTCAAAGCCTTTGTAACAATAATGACAAGTCTAAGAGTGACAATGAGGATTCAACTGCATCACAGGTTTTATCTCATAAAAGAAAATACATGGTAACTACTGAGGAATGTACAAAAGAAGAAGAGACTAATAATGTGGTTGTGGAGTCAGATACCAAAAGCATTGGAAATACCATTAATAAAATACCCAAGGTTGATTTGTACTCTTCTCCATTTTCAACAGGGAATAAACAAACAACTGAAGATGAATTGGAGGAAATCAATACCATGGATGATGACTTATTTGGCCTACTTAAAAACTTTCAAGAAATGCCAGTTCCAGATTGGTACCAGAAAAGAGGACAACCATTGGAACTTGAAACTCAACAAGATGCTTCATTGGGCCCCATAGATCAAGCATTTTCAACTCATGACAGTTTTTGGAGAAACATGCCCAAATATTGA 1572 0.3772 MPRRINNDNNNREDNYNDGVVAKEENGGEKSLRGKTKKGPWTVSEDIMLREYVMKYGEGNWNCVQKNSGLARCGKSCRLRWANHLRPNLKKGSFSKEEEDLIVQLHAKLGNKWARMAAQLPGRTDNEIKNFWNTRVKRCQRAGLPLYPPQVLHEANVYHLQQHLKPQPSSSSSSSFSFSPLFMSSSNHQEINQLKLIAHPSTNQHSSCLSYNNPQPYPQFKFPNENPNITNSGNLGFPLSPISITSSLFNQSYNNVNNNSNNDYYHLGSYNYGFHSNNSDTNNNNVKLMPNSPFEALPPLIQGSNNNNEASLSQSSPPLSSTTPTSSHASGNNGYLIGGGASNMATNGDGGRSGVAPLSPPQENGGGGLLGAVLVEAQSLCNNNDKSKSDNEDSTASQVLSHKRKYMVTTEECTKEEETNNVVVESDTKSIGNTINKIPKVDLYSSPFSTGNKQTTEDELEEINTMDDDLFGLLKNFQEMPVPDWYQKRGQPLELETQQDASLGPIDQAFSTHDSFWRNMPKY 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01173 523 CDD SANT 40 85 IPR001005 -
Adu03g01173 523 MobiDBLite consensus disorder prediction 382 403 - -
Adu03g01173 523 Gene3D - 37 90 - -
Adu03g01173 523 ProSiteProfiles Myb-like domain profile. 33 85 IPR001005 -
Adu03g01173 523 Gene3D - 93 139 - -
Adu03g01173 523 MobiDBLite consensus disorder prediction 1 37 - -
Adu03g01173 523 CDD SANT 93 134 IPR001005 -
Adu03g01173 523 SMART sant 90 138 IPR001005 -
Adu03g01173 523 SMART sant 37 87 IPR001005 -
Adu03g01173 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Adu03g01173 523 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 496 - -
Adu03g01173 523 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Adu03g01173 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Adu03g01173 523 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Adu03g01173 523 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Adu03g01173 523 MobiDBLite consensus disorder prediction 298 340 - -
Adu03g01173 523 MobiDBLite consensus disorder prediction 281 369 - -
Adu03g01173 523 SUPERFAMILY Homeodomain-like 37 132 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01173 Adu-Chr3 13139955 13142680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01173 16 182 MYB Transcription Factor Family AT4G26930 64.118 2.29e-66 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu03g01173 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01173 K09422 - gmx:100784779 347.436