Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01106 ATGGCAGAAACTGAGATTCCTGAATATTTTCTTTGCCCAATTTCCCTTGAGATGATGAAGGAGCCTGTGACTGCGGTAACAGGCATCACATACGAAAGAGAAAGCATTGAGCAATGGCTGCGGAAGGCGAAAGAGTGCGTTTGCCCCGTGACGAAGCAGCCATTGCCGCGAAGCTCACAATATTTGACCCCAAATCACACTTTAAGGAGACTGATTCAGGCATGGAGTGAAGCCACTAATAATGCAGCTAGAGGCCACGGTGCTGATCATCAACAGATTCCAAATCCGCAGTTGGAGAAGGTGCAAGTTGAGAAGCTAGTGAAGGATCTTAAGGTTCCTCATAGGAATCAAAGAGCGCTGAAGAAGTTGCATGGTTTTGCCATGGAAAGTGAGAGGACTAGAACTTGCATGGCTGAAGCTGGTGTTGCTAATGCCATGGTTATCTTCATTAACCAGCGTTTCCAACAAGGTAAGACAATGTGCCTAGAAGAAGCTCTAAGAATTCTTCATCTTACTTGGAATATACCATCAAGGACCAACATGAAGGCTCTTGTTGGAGAAAACTTGGACTTCATCAACTCTTTGACTTGGATTTTGCACCTTAACGTGCACAACAACAACGGTAAGATAGTAAACGAAGCAATGCCTTTATTGAAGTTGACAATTCAAAACACAAATTCAACCATCTTAGGGAACTTGAACTTCCAATTCTTCAAGGAAATGGTGAGAGTATTGGGAAAAAGAACAATATCTCAACAAGCCCTAAAATCCACCTTGCAAATCCTCATAGAAACATGCCCTTTGGGCAGGAATCGAAAGAGCATTGTCGAGTCGGGTGCAGTTTCAAACCTAATCGAACTTGAACTTGAAAAACCGGAGAAAAACATCTCCGAACATATATTCAACCTTCTAGCACATCTATGTTCATGTGCTGAAGGTAGAGAAATGTTTCTTAAACATGCCGCGGCAATAGCAATGGTTTCTAAGAGGATTCTTAGGGTTTCTTCCGCGACGGACGACCGGGCGATCCATATTTTATCGGTGATCGGAAAATATTCGGGATCAAGTGAGGTTGTTCTTGAGATGCTTAGGGTTGGTGCAGTGTCCAAGCTTTGCATGGTGATTCAAGCAGATTGTGCATCTTATTTGAAAGAGAAAGCAAGGGGTATACTTAGGTTGCATTCCAAAGTTTGGAGTGATTCACCTTGCATACAACTCTACTTATTAACTAGGTACCAAAGATAG 1245 0.4281 MAETEIPEYFLCPISLEMMKEPVTAVTGITYERESIEQWLRKAKECVCPVTKQPLPRSSQYLTPNHTLRRLIQAWSEATNNAARGHGADHQQIPNPQLEKVQVEKLVKDLKVPHRNQRALKKLHGFAMESERTRTCMAEAGVANAMVIFINQRFQQGKTMCLEEALRILHLTWNIPSRTNMKALVGENLDFINSLTWILHLNVHNNNGKIVNEAMPLLKLTIQNTNSTILGNLNFQFFKEMVRVLGKRTISQQALKSTLQILIETCPLGRNRKSIVESGAVSNLIELELEKPEKNISEHIFNLLAHLCSCAEGREMFLKHAAAIAMVSKRILRVSSATDDRAIHILSVIGKYSGSSEVVLEMLRVGAVSKLCMVIQADCASYLKEKARGILRLHSKVWSDSPCIQLYLLTRYQR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01106 414 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Adu03g01106 414 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Adu03g01106 414 SUPERFAMILY ARM repeat 219 381 IPR016024 -
Adu03g01106 414 Gene3D - 92 401 IPR011989 -
Adu03g01106 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 412 - -
Adu03g01106 414 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Adu03g01106 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 78 IPR013083 -
Adu03g01106 414 SUPERFAMILY RING/U-box 3 82 - -
Adu03g01106 414 CDD RING-Ubox_PUB 10 53 IPR045210 -
Adu03g01106 414 PANTHER WDSAM1 PROTEIN 3 412 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01106 Adu-Chr3 12019680 12021922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01106 3 412 U-box Gene Family AT2G35930 39.130 1.91e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01106 - - gmx:100811293 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01512 08 25235581 25237423 Adu03g01106 03 12019680 12021922 PCT