Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu03g01085 | ATGGAATGGAGCTGTACGGGCGATCCAGCGAGGGTTCCTGATCTGATCAAAGGCCGGAGTGGATTGGAATTTGACTCAAAGGAGAATGTGAGGTGTTGTGAAGTGTGTGTTATCTTAATTTTAAAAAATACAGAGGTTGTGTCGCAAAAGGGATTAGGTGCTGCAAAGAAATTTTATCCCCAAAGACCTGGTGAGGCCGATTGTATCTACTATTTGAGGACTGGATTCTGTAGCTATGGTTCTCATTGCCGTTTCAGCCACCTCCATGATCGGGTTGAGATCCAGTTTCATTGTGTCCGTCCAATGGATCGGTATGGCCGATTGAGCGAGGATTCCCAGCCTGATCCAGTGAGTGTTGAGGCTGTTGGTACTGTTGCTAGGGCTAGAGAATGGGAGTACCTGGAGCCAATTGGCCAGTCTTTGTGCCAGGCTTCTGTAGAGGCTGCAAATCCCATTGAACTTCACTGTGAGCCTTTGAGGTCTCTCTATTCTGTTGAAAGTTGTGTTTTCTTTGCCGAGGATTTGAGTTGTTTTGCATGTTTGTTTTTAATCAAGGTAAAAGATCTTCTAAGCTGGCTTGACCTTCCGGTGAGCGTGATCGTCAGGTGTGTAGAGTTGTGGTGGCCTGTATCCATTGCAAAGCAAAGGAATATTTTCGGCGGTTGCGTTTTGAACTATGTCGGCTTCGATTTGCTTAATGCTATATCACTACAATCTGTTTATACGACACCAGAATTTGTTAACTACTGCTCTAGGTAA | 759 | 0.4506 | MEWSCTGDPARVPDLIKGRSGLEFDSKENVRCCEVCVILILKNTEVVSQKGLGAAKKFYPQRPGEADCIYYLRTGFCSYGSHCRFSHLHDRVEIQFHCVRPMDRYGRLSEDSQPDPVSVEAVGTVARAREWEYLEPIGQSLCQASVEAANPIELHCEPLRSLYSVESCVFFAEDLSCFACLFLIKVKDLLSWLDLPVSVIVRCVELWWPVSIAKQRNIFGGCVLNYVGFDLLNAISLQSVYTTPEFVNYCSR | 252 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu03g01085 | 252 | Gene3D | - | 24 | 101 | - | - | |
Adu03g01085 | 252 | SMART | c3hfinal6 | 62 | 89 | IPR000571 | GO:0046872 | |
Adu03g01085 | 252 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 64 | 87 | IPR000571 | GO:0046872 | |
Adu03g01085 | 252 | SUPERFAMILY | CCCH zinc finger | 65 | 91 | IPR036855 | GO:0046872 | |
Adu03g01085 | 252 | PANTHER | PROTEIN PHOSPHATASE RELATED | 45 | 100 | - | - | |
Adu03g01085 | 252 | PANTHER | ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN-RELATED | 45 | 100 | - | - | |
Adu03g01085 | 252 | ProSiteProfiles | Zinc finger C3H1-type profile. | 62 | 90 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu03g01085 | Adu-Chr3 | 11515634 | 11518036 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu03g01085 | 59 | 94 | C2H2 Transcription Factor Family | AT5G18550 | 61.111 | 4.40e-10 | 57.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Adu03g01085 | zf-CCCH | 1.1e-08 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu03g01085 | - | - | adu:110280992 | 134.806 |