Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01085 ATGGAATGGAGCTGTACGGGCGATCCAGCGAGGGTTCCTGATCTGATCAAAGGCCGGAGTGGATTGGAATTTGACTCAAAGGAGAATGTGAGGTGTTGTGAAGTGTGTGTTATCTTAATTTTAAAAAATACAGAGGTTGTGTCGCAAAAGGGATTAGGTGCTGCAAAGAAATTTTATCCCCAAAGACCTGGTGAGGCCGATTGTATCTACTATTTGAGGACTGGATTCTGTAGCTATGGTTCTCATTGCCGTTTCAGCCACCTCCATGATCGGGTTGAGATCCAGTTTCATTGTGTCCGTCCAATGGATCGGTATGGCCGATTGAGCGAGGATTCCCAGCCTGATCCAGTGAGTGTTGAGGCTGTTGGTACTGTTGCTAGGGCTAGAGAATGGGAGTACCTGGAGCCAATTGGCCAGTCTTTGTGCCAGGCTTCTGTAGAGGCTGCAAATCCCATTGAACTTCACTGTGAGCCTTTGAGGTCTCTCTATTCTGTTGAAAGTTGTGTTTTCTTTGCCGAGGATTTGAGTTGTTTTGCATGTTTGTTTTTAATCAAGGTAAAAGATCTTCTAAGCTGGCTTGACCTTCCGGTGAGCGTGATCGTCAGGTGTGTAGAGTTGTGGTGGCCTGTATCCATTGCAAAGCAAAGGAATATTTTCGGCGGTTGCGTTTTGAACTATGTCGGCTTCGATTTGCTTAATGCTATATCACTACAATCTGTTTATACGACACCAGAATTTGTTAACTACTGCTCTAGGTAA 759 0.4506 MEWSCTGDPARVPDLIKGRSGLEFDSKENVRCCEVCVILILKNTEVVSQKGLGAAKKFYPQRPGEADCIYYLRTGFCSYGSHCRFSHLHDRVEIQFHCVRPMDRYGRLSEDSQPDPVSVEAVGTVARAREWEYLEPIGQSLCQASVEAANPIELHCEPLRSLYSVESCVFFAEDLSCFACLFLIKVKDLLSWLDLPVSVIVRCVELWWPVSIAKQRNIFGGCVLNYVGFDLLNAISLQSVYTTPEFVNYCSR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01085 252 Gene3D - 24 101 - -
Adu03g01085 252 SMART c3hfinal6 62 89 IPR000571 GO:0046872
Adu03g01085 252 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 64 87 IPR000571 GO:0046872
Adu03g01085 252 SUPERFAMILY CCCH zinc finger 65 91 IPR036855 GO:0046872
Adu03g01085 252 PANTHER PROTEIN PHOSPHATASE RELATED 45 100 - -
Adu03g01085 252 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN-RELATED 45 100 - -
Adu03g01085 252 ProSiteProfiles Zinc finger C3H1-type profile. 62 90 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01085 Adu-Chr3 11515634 11518036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01085 59 94 C2H2 Transcription Factor Family AT5G18550 61.111 4.40e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu03g01085 zf-CCCH 1.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01085 - - adu:110280992 134.806