Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01053 atgtgCAATCGACGGAGAGACTCACCTCATTCTTTCGACTCTCTTATTCTGCCGCTTCTTTCTCGCCGGCGGTTTTCTCCTCTCTGCCGCCTCAATTTTCCGGTGATCAGCTCCGTTCGCAGCCACAGGCAAAGGGAGCAACAAAGCCTCTGGAATGATTTGTTATGGCCCAACAGTCATCTAGGCTTCAGCGGTTGCTTACTCTGTTGGATACTGGGTCAACCCAAGCGACAAGACTTGAACAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGCAAAAATTGGGAGACAAGAGTCGCTGCTGCTCATGCAATTGGGTCTATTGCTGAGAATGTTAAACACACAAGTTTGAATGAACTTACTACATCTGTTGTATCAAAAATATCTGAGAATGGGATATCATGTAGTGTTGAGGATCTTTGTGCATGGACATATTTGCAATCAAGAATTACAGGAAGCTCATTTAGAAGTTTTGACATGAGCAAGGTGCTTGAATTTGGAGCTTTATTAGCATCTGGAGGACAGGAATATGATATTGTAAGTGATAATATAAAGAACCCAAAGGAGCGACTGGTACGCCAAAAGCAAAATCTTCGACGCCGTTTAGGTTTGGATGTTTGTGAACAATTTATGGATATGAGTGATGTAATAAGAGATGAAGATCTTATGACACACAAGTCAGATTCACATCCCAATGGAATAGATCATGGAGTTTTTACTTCTTCTTCTGTGCATAACATCCAGAAAATGGTTGCAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAACTGAATCTTCTAAAGCGCAAAGCAAAAATAAACTCAAAGGACCAGACAAAAAGCTGGGTCGAAGATGGTGTTACCGATCCATCAGGTGCTCAGAATTCGGCTTCGAAAGCCACGTATCCTGAGTCAGTTAATTACAATAAGGTATTCATGGATGTTAATCATGATGATGATGGCCTTGACCATGATGGGGATGGACAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATTGATATGTTTGATCCAGTTTGGGAGATCCGACATGGTAGTGTGATGGCACTGAGAGAAATTTTAACACATCAAGGTGCTTCTGCTGGGGTATTGAAACATGACTTACGCTTGGGTGGGAACTTTATGGTCGAATTAGAAGACAAAAGTATAACTATTGAAAAAAAAGAAGACAGTAGTATGTCAAATATATTGAAGAGAGAGAGGGAGATTGATTTGAATATGCAAGTTTCTGCAGATGAGTTTGACTCAAACTTGAAGAGACCAAAACTTGAAAATGTAACATCATCAACCTCGATGGATAGTCTAATTACTTGCAGCAATGAAGGTGATACTAAAATCAGCATTAGTTCTGAAACCTCTGGGTACAATTTACCTTTGGATTGTGTAAATGGGCAATTTAATTGTAATTCTGTTGAGATGGATGTGGTATCTTTCTCTGATGGACTGCAAGATGCATGCAAGGAACCTACTATTGTAGCAGAGCAGAAGGGTTATTCTGAAGAGATTCCCTCCAGAAATCTTAATGTGCTGAGAAATGTTCCCCAGAATTCCGAGCTGATGAGCATGGTTAAAGTTGCCAGAAGTTCATGGTTGCGAAACTGTGGATTTCTTCAAGATTGTGTGATACGCTTTTTGTGTGTGTTGTCACTAGACCGCTTTGGAGATTATGTATCCGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCGGCATTTAAGTACATGCATCCGGCACTGGTAAATGAAACATTGAATATATTGTTGAAAATGCAGTGTAGACCAGAATGGGAGATTCGTCATGGAAGTCTTCTAGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGTTGCTACCTGACTTGCTTGGACTTGTTCTTCCTGCATGTAAATCTGGGTTGGAGGACCCGGATGATGATGTCCGAGCTGTTGCTGCTGATGCCTTAATACCAGCTTCAGCTGCAATCGTTGCATTGCAGGGTCCAACATTGCGCACAATTGTGATGCTGCTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACTAGCAGTGTTATGAATTTGCTGTCAGAAATTTATTCTCAAGAAGAGATGGTCCCAATGATGTATGAAGTTCTTAGATTGGGAGACAACGGAATATCTATTCAAAATGGAGTCGGGGGTGGTGATGATGATGATGATGATGAAGAAAATCCTTATGTGCTTTCAACGTTGGCACCACGTTTGTGGCCTTTTATGAGGCATAGTATCAGCTCTGTCCGGTATTCAGCAATGCGGACTCTGGAGAGGCTACTTGAAGCTGGATATAAGAGAAGAATGTCCGAGTTGTCTAATGCTTCGTTTTGGCCCTCTATCATATTTGGAGATACCCTTAGAATTGTATTTCAGAATCTGCTATTGGAAACAAATGAGGATATTTTGCAATGTTCAGAGAGAGTGTGGAGTCTCCTTGTTAAGTGTTCTGTGGAGGACTTGGATACTGCTGCGAGATCTTACATGGCTTCTTGGATAGAACTTGCTTCTACACCATTTGGTTCAGCATTAGATGCCTCAAAGATGTTTTGGCCTGCTGCATTTCCAAGGAAAAGTCAATTTAGAGCTGCTGCTAAAATGAGAGCTGTGAAGTCTGAATATGATTATGGTGGGGATTTTGGTCTTGATTCTACAAAAGGATCTGTTCCACAAGAAAGAAATGGTGATGCTGCTATGGATTCAGTGAAGATAGTTGTTGGTGCTGATGTGGACACATCTGTTACTCATACACGGGTGGTTACAGCAACTGCATTGGGAATTTTTGCCTCTAAGCTGCCAGAGGATTCTTTGAAGTATGTTGTTGATCCACTCTGGAGGTCTCTAACCTCTTTGTCTGGTGTTCAACGTCAGGTTGCATCTATGATGCGTAATGAGGCTGGTCAATTGCTAAATGCTATCAAGTCTTCTGGTATGTTTGATGAGTTATTGTCAACTACCAAAATTGAGTTGGATAGCTTGAGTGTGGATGGTGCCATTAGTTTTGCATCAAAAGTTCCAGCAGTGTGTAATGATAGTTCTCTGAATGAGTCCTTGATAAAGAATACTTTAGATGATATAGAATCCACAAAACAGAGGCTCTTGACAACTTCTGGCTATTTGAAATGTGTGCAGAGTAATTTGCATGTTACAGTCTCATCTGCAGTTGCAGCTGCTGTTGTTTGGATGTCTGAATATTCTTCTCGGCTTACCCCAATCATTTTGCCTTTGATGGCTTCAATCAGACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAAGCACTTGCTGAGCTAATATATCATTGTGTTGCTCGTAGGCCATGCCCAAATGATAAGTTAATTAAAAATATATGCAGTATGACATGCTTGGATCCTTCCGAGACCCCTCGAGCTAAACTCATTTGCTCCATGGAGAGTATTGATGACCAAGGTCTTCTGTCGTTTGGAACTCCTGTGAGCAAACATAAATCAAAGGTCCATGTTTTGGCTGGTGAAGATCGATCAAAAGTGGAAGGGTTCATAAGTAGACGTGGGTCGGAATTAGCGTTGAGGCTTTTGTGCGAGAAGTTTGGTGCTTTGTTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAGGTGCTTAAACCTAGCTCCTCTGAATCTCCAGCAGTCACTAATGAAAAACAAGCTACTATGGCTGTTGAGTCTATTAGTGATCCCCAGATATTGATTAACAATATTCAGGTGGTACGATCTATTGCGCCCTTGTTAAATGAGGAGTTAAAGCCAAAATTATTGACACTTCTCCCGTGCATTTTTAAATGCATTCAACATTCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCCCGGTCAATGACTGTGAAAGTTATGAGTGCTGTGGTTGAAAATGCTATCCCAATGTTGGAAGATGCATCATCAGTTCATGCTCGTCAAGGAGCAGGCATGTTGATTAATTTTCTTGTTCAGGGCCTGGGGGTAGAGTTGGTCCCTTACGCTCCATTGTTGGTAGTTCCACTTCTAAGGTGCATGAGTGACTGTGATCAGTCTGTCAGGCAGAGTGTGACCCATAGTTTTGCTGCTCTTGTGCCTTTACTTCCTTTGGCACGAGGCCTTCCTCAACCAGTTGGATTGGGGGAAGGTATATCTAGAAATGCTGATGATTTGCAATTTTTGGAGCAACTGCTTGACAACTCCCACATTGAAGATTACAAGTTATGCACTGAATTGAAAGTCACATTGAGAAGGTACCAACAAGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACGCTTCAGTCATCGGCTATTGTGGCCTCTGATATTGCTGAGCATCGAACTCAGTCTGGGAATGGAGATCTTCTACCATCTTTGATTATTTGCCCATCAACCCTAGTTGGACACTGGGCCTTTGAGATAGAGAAATATATTGATGTTTCAGTTATATCTTGTCTTCAGTACGTTGGTTCTGCTCAGGACCGAATGATTCTTCGAGATCATTTTTGCAAGCATAACGTCATTATAACATCATATGATGTTGTCCGTAAAGACATCGATTATTTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCTAAGTCCAAAGTTACACTTGCTGTAAAGCAGTTAAAAGCCCAACACCGCTTGATATTGAGTGGGACTCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAGCAACATATGGAAAACCGCTTTTAGCTGCTAGAGATCCAAAATGCTCAGCCAAAGATGCCGAAGCAGGAGCACTTGCTATGGAGAGATTGCATAAGCAGGCTATGCCTTTTCTCCTTCGTAGAACAAAGGATGAGGTCTTATCTGATCTTCCGGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAATTTAAACTCTATGAACAGTTTTCTGGTTCTCACGTAAAACAAGAAATGTCATCTATTGTGACAACGAATGAGTCAGCTGGAGCAGAAGGAAGCAGCAGTTCAACTAAAGCATCTTCACATGTTTTCCAGGCACTTCAATACTTGCTGAAGCTGTGTAGTCATCCATTGCTTGTCATCAATGATAAGGTTTTAGATTCACTTTCGACCATCCTCTCCGGAGTGTTACCGGGTGTTTCTGACATCATTTCAGAACTTCACAACCTCCATCATTCGCCAAAATTAGTTGCTCTTCAGGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATGCTTCTGGTTCTGAGGGTTCTGTTAACGTTGGGCAGCACAGGGTATTGATATTTGCTCAACACAAGGCTTTTCTGGATATAATAGAAAGAGATTTGTTTCAGACACACATGAAAAATGTTACATACTTGCGGCTAGATGGATCAGTTGAGCCAGAAAAGCGTTTTGACATTGTCAAAGCATTCAATTCAGATCCTACCATTGATGTCTTACTGCTTACAACACACGTGGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGATCATCAGGCCATGGATAGAGCGCACAGGTTAGGTCAGAAAAAAGTTGTTAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAGGTTATGAGTCTGCAAAGGTTTAAAGTGTCTGTGGCTAATGCTGTGATTAATGCGGAGAATGCTAGCATGAAGACTATGAATACGGATCAGTTGCTTGATTTGTTTGCTTCAGCAGATACCTCCAAGAAGGGTTCTTCTGCCGGGAAGAGTTTGGAAAACAACCCTGAAGGAGACGCTAAACTAGTAGGTACCGGAAAGGGGCTGAAAGCCATACTTGGGGGATTGGAAGAGCTATGGGACCAATCACAATACACAGAAGAGTACAATCTAAATCAATTCTTAGCAAAACTAAATGGTTAA 6126 0.4166 MCNRRRDSPHSFDSLILPLLSRRRFSPLCRLNFPVISSVRSHRQREQQSLWNDLLWPNSHLGFSGCLLCWILGQPKRQDLNSLLKKVSQYLRSKNWETRVAAAHAIGSIAENVKHTSLNELTTSVVSKISENGISCSVEDLCAWTYLQSRITGSSFRSFDMSKVLEFGALLASGGQEYDIVSDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDMSDVIRDEDLMTHKSDSHPNGIDHGVFTSSSVHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWVEDGVTDPSGAQNSASKATYPESVNYNKVFMDVNHDDDGLDHDGDGQWPFHTFVEQLIIDMFDPVWEIRHGSVMALREILTHQGASAGVLKHDLRLGGNFMVELEDKSITIEKKEDSSMSNILKREREIDLNMQVSADEFDSNLKRPKLENVTSSTSMDSLITCSNEGDTKISISSETSGYNLPLDCVNGQFNCNSVEMDVVSFSDGLQDACKEPTIVAEQKGYSEEIPSRNLNVLRNVPQNSELMSMVKVARSSWLRNCGFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQELLPDLLGLVLPACKSGLEDPDDDVRAVAADALIPASAAIVALQGPTLRTIVMLLWDILLDLDDLSPSTSSVMNLLSEIYSQEEMVPMMYEVLRLGDNGISIQNGVGGGDDDDDDEENPYVLSTLAPRLWPFMRHSISSVRYSAMRTLERLLEAGYKRRMSELSNASFWPSIIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVKCSVEDLDTAARSYMASWIELASTPFGSALDASKMFWPAAFPRKSQFRAAAKMRAVKSEYDYGGDFGLDSTKGSVPQERNGDAAMDSVKIVVGADVDTSVTHTRVVTATALGIFASKLPEDSLKYVVDPLWRSLTSLSGVQRQVASMMRNEAGQLLNAIKSSGMFDELLSTTKIELDSLSVDGAISFASKVPAVCNDSSLNESLIKNTLDDIESTKQRLLTTSGYLKCVQSNLHVTVSSAVAAAVVWMSEYSSRLTPIILPLMASIRREQEEILQMKSAEALAELIYHCVARRPCPNDKLIKNICSMTCLDPSETPRAKLICSMESIDDQGLLSFGTPVSKHKSKVHVLAGEDRSKVEGFISRRGSELALRLLCEKFGALLFDKLPKLWDCLTEVLKPSSSESPAVTNEKQATMAVESISDPQILINNIQVVRSIAPLLNEELKPKLLTLLPCIFKCIQHSHVAVRLAASRCITSMARSMTVKVMSAVVENAIPMLEDASSVHARQGAGMLINFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPVGLGEGISRNADDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQSSAIVASDIAEHRTQSGNGDLLPSLIICPSTLVGHWAFEIEKYIDVSVISCLQYVGSAQDRMILRDHFCKHNVIITSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMERLHKQAMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQFKLYEQFSGSHVKQEMSSIVTTNESAGAEGSSSSTKASSHVFQALQYLLKLCSHPLLVINDKVLDSLSTILSGVLPGVSDIISELHNLHHSPKLVALQEILEECGIGVDASGSEGSVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASADTSKKGSSAGKSLENNPEGDAKLVGTGKGLKAILGGLEELWDQSQYTEEYNLNQFLAKLNG 2041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01053 2041 Pfam Helicase conserved C-terminal domain 1821 1923 IPR001650 -
Adu03g01053 2041 MobiDBLite consensus disorder prediction 283 305 - -
Adu03g01053 2041 Gene3D - 1193 1403 IPR011989 -
Adu03g01053 2041 MobiDBLite consensus disorder prediction 289 305 - -
Adu03g01053 2041 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1457 1627 IPR014001 -
Adu03g01053 2041 Pfam SNF2-related domain 1463 1759 IPR000330 GO:0005524|GO:0140658
Adu03g01053 2041 Gene3D - 1418 1676 IPR038718 -
Adu03g01053 2041 Gene3D - 1687 1999 IPR027417 -
Adu03g01053 2041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1430 1677 IPR027417 -
Adu03g01053 2041 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 984 1973 IPR044972 GO:0003677|GO:0016887|GO:0017025
Adu03g01053 2041 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 77 985 IPR044972 GO:0003677|GO:0016887|GO:0017025
Adu03g01053 2041 Pfam Domain of unknown function (DUF3535) 832 984 IPR022707 -
Adu03g01053 2041 Pfam Domain of unknown function (DUF3535) 985 1228 IPR022707 -
Adu03g01053 2041 SMART helicmild6 1837 1923 IPR001650 -
Adu03g01053 2041 SUPERFAMILY ARM repeat 79 1484 IPR016024 -
Adu03g01053 2041 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1813 1969 IPR001650 -
Adu03g01053 2041 CDD DEXHc_Mot1 1445 1677 IPR044078 GO:0005524
Adu03g01053 2041 CDD SF2_C_SNF 1792 1934 - -
Adu03g01053 2041 SMART ultradead3 1441 1638 IPR014001 -
Adu03g01053 2041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1678 1979 IPR027417 -
Adu03g01053 2041 Gene3D - 553 730 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01053 Adu-Chr3 11111401 11129539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01053 1440 1978 RAD5 or RAD16-like Gene Family AT1G02670 26.316 7.54e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu03g01053 SNF2_N 2.8e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01053 K15192 - vvi:100247209 2612.02