Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01043 ATGTCCATAACCGAGGAAAGTGACAGACCCGACCCGTCCGCTAAACGGGGCACCCAGAAACGTTCCCGCCAGCGCGATACCGCATTCCGCGGGGTTCGAAAACGCAGCTGGGGACGCTACGTCTCCGAGATCAGAATGCCCGGTCAGAAAACCCGTGTATGGCTCGGCTCATTCGGCTCGCCTGAGATGGCGGCTCGTGCATACGACTCCGCCGCTTTCTTCCTCAAAGGAAACTCCGCCACCCTCAATTTCCCCGACCTTGTTCACTCGCTGCCTCGCCCTCTCTCGTCGTCCAGGCGTGACATACAGTCGGCGGCGGCCAAAGCGGCCGTGGAGGTGGCGGATGCACTGAGCGGGCATGACCCGACCCGGTCGCCCGGGAAGGCGGATTCCGTGGAGTGGTGGGAAGGTTTGTTGGGAGAAGAGGAAGAGTCAGAGTCGGTTTGGAGAACGACGTGGTTTGAGGATGTGAAGGAATGTGGTCCTATGAATCTCAGTCCTGCAGGTTCCGTTGGAGAATTGACATGGAACGAAGTCTTCAATTTCAACGACGACGTTCTGTTATTCTCCTAA 573 0.5812 MSITEESDRPDPSAKRGTQKRSRQRDTAFRGVRKRSWGRYVSEIRMPGQKTRVWLGSFGSPEMAARAYDSAAFFLKGNSATLNFPDLVHSLPRPLSSSRRDIQSAAAKAAVEVADALSGHDPTRSPGKADSVEWWEGLLGEEEESESVWRTTWFEDVKECGPMNLSPAGSVGELTWNEVFNFNDDVLLFS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01043 190 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Adu03g01043 190 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Adu03g01043 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 133 - -
Adu03g01043 190 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Adu03g01043 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF036-LIKE 18 133 - -
Adu03g01043 190 MobiDBLite consensus disorder prediction 1 31 - -
Adu03g01043 190 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Adu03g01043 190 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Adu03g01043 190 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Adu03g01043 190 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Adu03g01043 190 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01043 Adu-Chr3 10961943 10962515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01043 14 110 AP2-EREBP Transcription Factor Family AT5G11590 56.436 1.03e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Adu03g01043 AP2 8.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01043 K09286 - gmx:100783790 174.866