Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01041 ATGGTGGTCAACGAGAGGCCTACGAAGAGGATGAAGAGAAGAGTAACCGCCGATCTCCACGACTTTCTCACTTTCCCTTCCGCCGCCGGCGCTTCCTTCGACTCACCCTTTCGCAACTGTGTCCAGCGGTTCCTGGCAGACCATGGTCGCATAACGTTTCCTCCTTCACTCTTCCCGGCGCTGATGACGTGGCAGATCTTGTTCCGGGTTGGTGACCTTGTCGAAGGCCCTGATCTCTCGCCTGCGGTGGTCACGCTTGACATTGTGGAGGAAGATGTCACGCGCTCTCGAAGTTCAGTGTACTGTGACCAGTGTCGAGTCGTTGGGTGGAGCGGTCACCCGGTCTGTCGCAAGCGCTATCATTTCATTATCCGGGCTGCCAGTAAATCCATCGAGTCTTACCAAAGACCTTGTTCCAGATGTGAAAATCTTGTCCAACTATCTGAACCAAGGTGTAAATCATGTGACTTCAACATTACTGTGGATGATCTTGAAGATTGGGTGTATCAACAAATCGACGATAACACCCATCTCCTGCATGGTGTTGTCCACTCCAATGGTTATGGTCACCTGCTTACTCTCAATGGAAGAGAAGGTGGCTCAAAGCTTCTCTCTGGATTTGATATTATGGGGTTTTGGGATAGACTGTGTTCTGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGGTTGGAATATCGAGTGCTCCATGCAATCACCAATAGCCATTCGTGGTATGGCAATTGGGGTTATGAATTTGGAAATGGCAGCTATGCTCTTACACAAGATGCCTACCAGAAAGCAGTGAATACCCTGTCAGATATGCCCTTGTCCTCATTTTCATTCCAGGGTCGGGGACCACGAAGCCGCCTTCAGTGTGTTATTTCTCTTTACCAGTCGTTGGCTGAAACTGAACTTCTAACAATCAAAGACCTCTTCTCCTTTTTGTTGACATTGGTTCATGAATTTCGCAAGCCGATGACGAAAAAAATATCTAAACAGGATGAAGGCTCCAACAAATGTAATTTATTGTGTGCTTGGACAAGACATGATGTTGAGGATGTTCAACAGGCTTTGATTAAGGTTTTGCTTGCATCAGCTTCCTGTAGGGAGGTCAAATGGGTTGCTAGACGTGTTCTCAAGGGTGCAGTTTGCAGGGGTGTTTCATCTCCGGAGCTTCTAGACTACAGTCTTAAGCATTTGGAAGGAAAATTAGTTGCCAACGGAATGGTAGTTGCTACACGATGCAATCCAAATACTAGTGCTATAGAATTCAGGCTAGAACCGTTCTGTGATGGATTTACGCGAAATTCAAGCCATCCATCAGAAGAGCAAGTCATATCCGATCTGGCATTTTTATTTGATTCGATAATTCACCCAGACAAAATGGTGAGCTATAGACCCAAGGTTATGAGGAAAAGCGTGGCTGATTCAGCAAGGAAGCTTCTTGACTGTAAGCAGTTTGTGAAAGAGTACAAGCCAGAGGTGGCCATGGAACAACCTCCAGTCATCAGACTGTGGTGTCAGGTTGAACTTTCTGATCAGCCGAAAGATGATCCATCCCCGCCACCAGAACTAATCGTTTTGCCTTTGAGTGCTACTGTTGCCGACCTTAAGAGGGAGGTCACTAGTGCTTTTCAAGAGGTGTATGCAATGTTCAAGAGGTTTCAAGCTGAGGAAGTAATAGGGTATGGGTCAATTAGTGACTCGCTCACCTTAAAATTCTTGCTTGGAACAAGTGCGATGGTCAAAATTCAAGGCAAGTGTCCAGCCAAGTATGGTCTAAGCCGCTTCCGAATGGAACGGGGTACAGAGACATGGAGAGTTGACTGCCCCTGTGGGGCTAAGGACGATGATGGAGAAAGAATGTTAGCATGTGATACTTGCAGTGTTTGGCAGCATACGAGGTGCGCGGGAATTGATAATTGTGATGCAATACCTTCTAAGTTTGTGTGTCTTAGATGCCTTAGCTCGTACCGTCAGGAAGCTGTAAATTTGCCAGACTCCGATGTTGAAGCTAACAAGTCTTACAAATTATCGAATGCTTCTTGCAAAGATGAAGCAGTGGCAACGGACTGTGCAGCAGTTGCTTGTAACATAACTGTAGATTTTGGTGTACGATGA 2139 0.4619 MVVNERPTKRMKRRVTADLHDFLTFPSAAGASFDSPFRNCVQRFLADHGRITFPPSLFPALMTWQILFRVGDLVEGPDLSPAVVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASKSIESYQRPCSRCENLVQLSEPRCKSCDFNITVDDLEDWVYQQIDDNTHLLHGVVHSNGYGHLLTLNGREGGSKLLSGFDIMGFWDRLCSAISVRKVSVMDLSKKFGLEYRVLHAITNSHSWYGNWGYEFGNGSYALTQDAYQKAVNTLSDMPLSSFSFQGRGPRSRLQCVISLYQSLAETELLTIKDLFSFLLTLVHEFRKPMTKKISKQDEGSNKCNLLCAWTRHDVEDVQQALIKVLLASASCREVKWVARRVLKGAVCRGVSSPELLDYSLKHLEGKLVANGMVVATRCNPNTSAIEFRLEPFCDGFTRNSSHPSEEQVISDLAFLFDSIIHPDKMVSYRPKVMRKSVADSARKLLDCKQFVKEYKPEVAMEQPPVIRLWCQVELSDQPKDDPSPPPELIVLPLSATVADLKREVTSAFQEVYAMFKRFQAEEVIGYGSISDSLTLKFLLGTSAMVKIQGKCPAKYGLSRFRMERGTETWRVDCPCGAKDDDGERMLACDTCSVWQHTRCAGIDNCDAIPSKFVCLRCLSSYRQEAVNLPDSDVEANKSYKLSNASCKDEAVATDCAAVACNITVDFGVR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01041 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 667 IPR013083 -
Adu03g01041 712 SUPERFAMILY FYVE/PHD zinc finger 605 663 IPR011011 -
Adu03g01041 712 SMART PHD_3 615 661 IPR001965 -
Adu03g01041 712 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 680 - -
Adu03g01041 712 Pfam PHD-finger 616 662 IPR019787 -
Adu03g01041 712 ProSitePatterns Zinc finger PHD-type signature. 616 660 IPR019786 -
Adu03g01041 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 680 - -
Adu03g01041 712 CDD PHD_MMD1_like 615 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01041 Adu-Chr3 10901093 10903894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01041 80 660 PHD Transcription Factor Family AT5G22260 28.000 2.07e-84 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Adu03g01041 PHD 3.8e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01041 - - gmx:100780558 1147.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g01041 03 10901093 10903894 Adu03g01041 03 10901093 10903894 ECH