Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01022 ATGGCTCGTGGAAGAATTCAGTTGAAGAGAATAGAGAACCCGGTTCACAGGCAAGTTACCTTCTGCAAGCGCCGAGCTGGGCTTCTCAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCGACGCTGAAATTGGCCTTGTCATTTTCTCCGCTCATGGCAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGAGTGATAGAGAGGTACATGAAGTTTACTGGGGCGGCTCAGCCTGAAGAACCACCAACTGAACCGCATCATCATCCTCTTGATGCTAAAGAGGAAGCGGATGTTCTAAAACAGGAAATTGACACATTGCAAAAGGGAATCAGTTATTTGTTTGGAGGAGGAACTGGGACAATGACAATCGATGATTTACAAATCTTAGAGAAGAATCTCGAGACTTGGATTTATCAAATTCGCTCAATGAAGATGAACCTCATGTTACAAGAAATTCAAGATTTGAGAGACAAGGAGGGTACACTCAAAGCAGCAAACAAGTTTCTCCATGATAAGATTTTGGAGAATACAACTGCATTTACTAACTTTGCTCCATTTGCTACTGACTCAACTTACCCACTAACTATACAAGATGGGATTTTTCCAGCTCTAGGAAATGTACTTGGTTAA 633 0.4281 MARGRIQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGVIERYMKFTGAAQPEEPPTEPHHHPLDAKEEADVLKQEIDTLQKGISYLFGGGTGTMTIDDLQILEKNLETWIYQIRSMKMNLMLQEIQDLRDKEGTLKAANKFLHDKILENTTAFTNFAPFATDSTYPLTIQDGIFPALGNVLG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01022 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu03g01022 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu03g01022 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu03g01022 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Adu03g01022 210 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 - -
Adu03g01022 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu03g01022 210 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Adu03g01022 210 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Adu03g01022 210 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu03g01022 210 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu03g01022 210 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Adu03g01022 210 Pfam K-box region 87 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu03g01022 210 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 202 - -
Adu03g01022 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01022 Adu-Chr3 10573190 10577333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01022 1 202 MADS-box Gene Family AT1G71692 64.115 1.35e-83 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu03g01022 K-box 7.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01022 - - gmx:100815314 309.301