Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00869 ATGAGAGACCTTTGCAGAAACTTCCAGCGTGGCAGCTGTCAATACGGAGATAGGTGTAAATTTATACATGCTGTGGCACAACAAGGGAAGCCTAATAATAGTTTTCATGGTTTTGGGGGACAGAATAGTTTTTACCAACAGCAACAGCAACAGCAAAATGTTAACCCTTTTGGATTTGGGTCTAAATCTGCTTCACAACCACACCAACAGCAGCAAAAGACCAATCCTTTTGGCTTTGGGCCTTTTGAAAACAAATGGACTCGGGGTGGCGCTTCGCGGCAATCTGATAACAACCCCCTACCGGCGAATCATGAATGTACAGATCCTGAGGTCTGCAAGCGCCAGATTGCTGAAGATTTCAAGCAAGAGAGGCCACTCTGGATACTTACATGCTATGGTCATTCTAAAGGTGCACCTTGTGACATAGTTGGTGATTTTAGCTATGAAGAACTGAGGGCAGCAGCTTATGAGGATGTGAAGCGAGGGATGAACTTGCAATCAATTGTTGAGAGAGAGAGAAATACACTGAATTCCAAGTTGGCTGAGTTCGAGAAACTACTTTCTGAACCCTACAGAATGCCATTTAATCCTGCTGTTAACAGTCAAAATCATCAGAATGCAAATCCGTTTTCAATGCCTATGCAAAATGATGGCCAGCATAATGCAAATCCATTTTCAATAACTACACAAAACAATGGTCCTGTGTCAGTCTCAAGCTTTAGCCAACTGGGTGCTTCATTGAACACGGGATTTGATAGGCCCTCTGCACAAGCACCGAACACTCCGCCACAGTCTAGTTTCTTCGGAAGTGGAGGAAACACTTTTACACCCAACACTGCAAACATAAGTGGCAGAGGCTTCTCAGGTGCTCCAAGCAGCCCCTTCTCTACCCCAGCGGAGTCAACAATGTTCCCGAGTTCAACTTCTCAGCAGTCATCCTTTGGCTTCAATGACTTGAGCTCCACTCCAATGTTTCAGACTACACCAGATGTTCAATCTTCAAGCATGTCCCAGGGAGAGAATGTTTCAACAGATCTCAGTATTTGGTTAAAAGAGAAATGGAATCCTGGAGAGATTCCCGAAGAAGCTCCTCCAGATTCAGTTGTTCGGTAG 1113 0.4474 MRDLCRNFQRGSCQYGDRCKFIHAVAQQGKPNNSFHGFGGQNSFYQQQQQQQNVNPFGFGSKSASQPHQQQQKTNPFGFGPFENKWTRGGASRQSDNNPLPANHECTDPEVCKRQIAEDFKQERPLWILTCYGHSKGAPCDIVGDFSYEELRAAAYEDVKRGMNLQSIVERERNTLNSKLAEFEKLLSEPYRMPFNPAVNSQNHQNANPFSMPMQNDGQHNANPFSITTQNNGPVSVSSFSQLGASLNTGFDRPSAQAPNTPPQSSFFGSGGNTFTPNTANISGRGFSGAPSSPFSTPAESTMFPSSTSQQSSFGFNDLSSTPMFQTTPDVQSSSMSQGENVSTDLSIWLKEKWNPGEIPEEAPPDSVVR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00869 370 PANTHER MAKORIN-RELATED 2 368 IPR045072 -
Adu03g00869 370 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 2 368 - -
Adu03g00869 370 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Adu03g00869 370 Gene3D - 1 75 - -
Adu03g00869 370 MobiDBLite consensus disorder prediction 285 342 - -
Adu03g00869 370 MobiDBLite consensus disorder prediction 54 106 - -
Adu03g00869 370 MobiDBLite consensus disorder prediction 88 102 - -
Adu03g00869 370 MobiDBLite consensus disorder prediction 202 225 - -
Adu03g00869 370 MobiDBLite consensus disorder prediction 248 272 - -
Adu03g00869 370 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Adu03g00869 370 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Adu03g00869 370 MobiDBLite consensus disorder prediction 54 78 - -
Adu03g00869 370 Coils Coil 169 189 - -
Adu03g00869 370 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 2 23 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00869 Adu-Chr3 8543490 8546849 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu03g00869 zf-CCCH 1.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00869 K14321 - gmx:100814339 441.81