Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00828 ATGATTCCAAGAGGAGCCACCGTGACAGGGGCGGGGAAAAGGACAAGGATAGAAGCAATGGGAAGCATAGGGATAGGGAGAAGAGGGACCGTGACCGGGATAGCAGAAGGCATGATAGAGATCATAGTAGTGATGAGTCTGATGATAGAGGAGATAGAGGAAGAACACAAGAGATTGGATGAAGAAATGGAAAAGAGGAGGAGAAGAGTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAAGGAAGAAGCTGAGAGAGAAAAGCAGGGTGAAGCAAGTGCTAGTGAACCAAAGTTGGGAAAGGCCTGGACCCTTGAAGGGGAATCTGACGATGAAGAAGCAACTGGTACAGGGAAGCCAGATACTGCGATGGATGTAGATGAAGATGAAAAACCTGTTGATAAAGAACCTGGGGATCCTATGGTGGCAGATGGTGATAATGGGGCAGTTACGTCTGATTTACAAGATGGAACTGCTGGTGCTCCTGAGGATGAGGAAATTGATCCATTGGATGCCTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAACACTGTTTGCTCTTCAATACCTGATAAAACTAATGACAAGAAACTCAAGGATAGAGGGGATGAGCAGGGTCGTAGTGGACAGGCAAGGAAAGTTTCCAATAATAAATCGATTGGAAGAATAATTCCTGGTGAAGACTCTGACTCTGATTATTCAGATCTTCAAGTTGACGATGACGACATTGAAGAAAATGATGAGGAGTTTATGAAAAGAGTGAAGAAGTCAAAAGCTGATAAGCTGTCTATAGTTGACCATTCAAAGATTGATTATCAACCTTTCAAGAAAAATTTCTACATTGAAGTGAAGGATGTCTCGAGGATGACTCCTGAAGAAGTTGCTGCATACCGGAAGGAGCTGGAGTTGAAGATACATGGAAAGGATGTTCCAAAGCCAGTAAAATCATGGCATCAGACTGGACTTACTAGCAAAATTTTAGAGACAATAAGAAAGCTTAACTATGAAAAGCCGATGCCTATTCAAGCCCAGGCACTGCCTGTAATAATGAGTGGTCGAGACTGCATTGGTATTGCTAAAACTGGATCAGGCAAAACACTTGCTTTTGTTTTGCCTATGTTGAGGCACATCAAGGATCAGCCACCAGTTGTTACTGGAGATGGACCAATTGGGCTTATCATGGCTCCTACAAGGGAGCTTGTTCAACAGATTTACAGTGATATAAAGAAGTTTGGGAAGGTACTGGGTCTAAGATGTGTACCTGTGTATGGAGGTTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAGCGTGGAGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGTACCAGTGGTGGCAAAATAACTAACCTGCGCAGGGTTACTTATTTGGTCATGGATGAGGCTGATAGAATGTTTGACATGGGGTTTGAACCCCAAATCACAAGAATTGTTCAGAATATCCGACCAGATCGTCAAACTGTTCTATTTTCTGCCACTTTCCCCCGCCAGGTTGAAATTCTCGCCCGCAAGGTTCTAAATAAACCTGTTGAAATACAAGTTGGTGGCAGAAGTGTTGTGAACAAGGACATAACACAGCTGGTGGAGTTGAGACCAGAAAAAGAAAGATTTCATAGGCTATTAGAGATATTGGGTGAATGGTATGAGAAAGGAAAGATTTTGATTTTTGTCCAGTCACAGGAAAAATGTGATGCTTTGTTCAAGGATTTGCTAAAGTCTGGTTATCCTTGCTTATCTCTTCATGGAGCTAAGGACCAGACAGATCGTGAATCCACAATTGCTGATTTCAAAAGCAATGTCTGCAACATGTTGATTGCAACTAGTATTGCTGCCAGGGGACTAGATGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCTAATCACTATGAAGATTATGTTCATCGTGTTGGCCGCACTGGCAGAGCAGGCCGAAAGGGTTGCGCTATTACTTTTATTTCAGAGGAAGAAGCAAGATATGCACCTGATTTGGCAAAAGCATTGGAGCTATCTGAGCAAGTTGTTCCTGATGACCTGAAGGCACTTGCTGATGGCTTTATGGCAAAAGTGAAACAAGGGCTTGAGCAGGCTCATGGAACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGAGAGGAGAGCAGCGAAGAAAGCTCAAGCCAAGGGATATGGGTTTGAAGAGGATAAATCAGATTCGGAAGATGAAGATGAAAATATTAGGAAGTCGGGAGGTGACATCTCACAGCTTGCTCATATTCTTGCTGCCTCAAAAGGCACTGTCCCTGCTATACCTAGCCCCATCTCTCCTGCTCAGCTGATTTCTAATGGTGGACTAACTGTTCCGTTGCCAGCTGTTCTTGGTAATCTCCAAACTACTACAGTTTTGCCTACAGGGCTTCCCCTTACTACAAATGATGGGGCAGCTCGGGCAGCATTAGCTGCTATTAACCTGCAGCACAACTTAGCTAAGATACAGTCTGAAGCATTGCCTGAGCATTATGAAGCTGAACTAGAGATAAATGATTTCCCCCAAAGTGCTCGGTGGAAAGTCACACACAAGGAAACTTTGGGTCCAATTTCTGAGTGGACAGGAGCCGCTATTACCACCAGGGGACAATATTTCCCACCTGGTAAAATCGCGGGACCTGGGGAACGCAAGCTCTACTTGTTCATTGAGGGTCCTAGTGAGCAGTCTCTTTACAACTTCCTGGTGGATCTCAACCTGGCAAATACTCTGTTGTTTAAAGGATGGGCCTTCTGGGGCTTGCTTACATCCTCAATTTTGTCATTGCCCATACTTGATTTGTGGTTTTCAATGGTGGCAATCATGGCACGGCAGCAGCGGTTTCTTTTTTTTTCATCCAGGGAATGTGTGCTTGTTATAGTTGTTCCGAGTTGTAGATTGCAACTGGAATGCTTGATGAGAAATATATAA 2997 0.4364 MIPRGATVTGAGKRTRIEAMGSIGIGRRGTVTGIAEGMIEIIVVMSLMIEEIEEEHKRLDEEMEKRRRRVQEWQELRRKKEEAEREKQGEASASEPKLGKAWTLEGESDDEEATGTGKPDTAMDVDEDEKPVDKEPGDPMVADGDNGAVTSDLQDGTAGAPEDEEIDPLDAFMNSMVLPEVEKLNNTVCSSIPDKTNDKKLKDRGDEQGRSGQARKVSNNKSIGRIIPGEDSDSDYSDLQVDDDDIEENDEEFMKRVKKSKADKLSIVDHSKIDYQPFKKNFYIEVKDVSRMTPEEVAAYRKELELKIHGKDVPKPVKSWHQTGLTSKILETIRKLNYEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVTGDGPIGLIMAPTRELVQQIYSDIKKFGKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVELRPEKERFHRLLEILGEWYEKGKILIFVQSQEKCDALFKDLLKSGYPCLSLHGAKDQTDRESTIADFKSNVCNMLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLAKALELSEQVVPDDLKALADGFMAKVKQGLEQAHGTGYGGSGFKFNEEEDEERRAAKKAQAKGYGFEEDKSDSEDEDENIRKSGGDISQLAHILAASKGTVPAIPSPISPAQLISNGGLTVPLPAVLGNLQTTTVLPTGLPLTTNDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQSARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIAGPGERKLYLFIEGPSEQSLYNFLVDLNLANTLLFKGWAFWGLLTSSILSLPILDLWFSMVAIMARQQRFLFFSSRECVLVIVVPSCRLQLECLMRNI 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00828 998 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 473 481 IPR000629 -
Adu03g00828 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 699 IPR027417 -
Adu03g00828 998 Gene3D - 270 527 IPR027417 -
Adu03g00828 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 676 IPR027417 -
Adu03g00828 998 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 318 346 IPR014014 GO:0003724
Adu03g00828 998 SMART helicmild6 579 660 IPR001650 -
Adu03g00828 998 MobiDBLite consensus disorder prediction 185 240 - -
Adu03g00828 998 MobiDBLite consensus disorder prediction 61 93 - -
Adu03g00828 998 MobiDBLite consensus disorder prediction 724 762 - -
Adu03g00828 998 Pfam Helicase conserved C-terminal domain 552 660 IPR001650 -
Adu03g00828 998 Coils Coil 42 93 - -
Adu03g00828 998 CDD DEADc_DDX46 307 528 - -
Adu03g00828 998 MobiDBLite consensus disorder prediction 102 140 - -
Adu03g00828 998 MobiDBLite consensus disorder prediction 61 165 - -
Adu03g00828 998 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 774 - -
Adu03g00828 998 MobiDBLite consensus disorder prediction 195 211 - -
Adu03g00828 998 Gene3D - 528 702 IPR027417 -
Adu03g00828 998 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 538 699 IPR001650 -
Adu03g00828 998 Pfam DEAD/DEAH box helicase 343 514 IPR011545 GO:0003676|GO:0005524
Adu03g00828 998 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 45 774 - -
Adu03g00828 998 MobiDBLite consensus disorder prediction 717 762 - -
Adu03g00828 998 SMART ultradead3 337 542 IPR014001 -
Adu03g00828 998 CDD SF2_C_DEAD 539 669 - -
Adu03g00828 998 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 349 527 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00828 Adu-Chr3 8060025 8065221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00828 315 680 Eukaryotic Initiation Factors Gene Family AT3G19760 31.880 1.06e-58 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00828 K12811 - gmx:100784306 1388.63