Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00737 ATGTCCAGTGTATCATCCATCAGAGAAGGAGTTCAAGAACCCTCTGATATATCTACAAAAGATTGCTCCCGAGGCTTCAAAATTTGGTTTGAAACAAATGTGCAGCCTCTTCGGCTTTCTAAATGGAATGAGAAAAATATAATGAACTTTTCAATGAGTGGAAGAAAATACACATATCATGAATTTGAGGCTCTAGCAAATCAAGCTTTTATCGGTTCGGCCGATGTGGAAAAAGAATTCTGGCATGAGATGGTGAACGGAGAGAAGGGAACCGTTGAGTACGGAGTCAATATTGAGGGCAGTGCCTTTTCATGCCATCCTAATGACAAGCTTGGAAGAAGCAAATGGAATTTGAAGAATTTTTCAAGACTGCCGCAATCTACATTGAGATTAGTTGGCAAAGAAATTCCAGGAATAACTGATCCTATGCTTTATATTGGGATGCTGTTCAGCATGTTTGCATGGCATGTAGAAGATCATTACTTGTATAGCATAAATTATCACCATTCAGGTGCTAACAAAACTTGGTATGGAGTGCCTGCTCATGCAGCCTCTCAGTTTGAAAATGTTGTATTGCATCATGTGTATAACCATAAAATCATGTCGAAACATGGCGAAGACGAGGCTTTCCAGCTTCTTGCGCATAAAACTACAATGTTCCCTCCAAATATATTGCTACAACATGGTGTCGCTGTTTACAAGGCTGTGCAGAAGCCAGGGGAGTTTGTCATCTCCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTGAACTTTGCTATTGGAGACTGGATTCCAATGGGGGCTATAGCTAGCACTCGTTATGCATATCTCAAAATGCTTCCTATAATTCCATTTGAGGAACTTCTTTGTAAAGAGGCAATGCAGTTTTATAAGTCCTCAAAAGTAAGAGGTTCAATGAGCAAACATATTGATTTCCAATCTTATCTTGCAACTGTTGCGTCTTTCGTGCAGTTTATGCAATTTTATGAGAAGGCCCTTTTGCGACTTAAAGCTTCCAGAGAATGTTCAATTTCTTCGAATACTGTAGGTACCTTGATTTGTAGCAACTGCCATAGAGATTGTTATGTAGCTTACTTGATGTGCAAGCACTGCTATTCTCTTCCCATTTGTCTTTACCATGACATTGCATTGCAGAGGTGTTCATGTGGGAGAAAATATACTGTTTATAAAAGGGACAATTTTCTAGAATTCGAGGATGCTGCTAAGAGTTTTGAACAAGAAGAATGTGTAAAGTTAAAACTTAAAGGGAAGGTGAATTTTGAAGGAGACATGTTATCCCCTGGAAATGATTATGATTGCATCCAAGATTCCCATAACAATCCTTGGCATGAAGAAAAAGGTAGCATCAAAGCAGTTACTTCCATGGGCTTAGTTTCTGAACAGAAAACAAGAGAAATGACCTGCTTAAAGATCAAGTTAGAAAAGATGAAGAAGGAAAAAACTAAGCATGGTAGAAAAAGATGCTCTCCAACAGTGAATGGATACCAGAAAACAACGGGGTTCGTTCGAGTGTTGCAGCATTCTGATGAGAGAGAGAGTGAGAGAGAGAGTGAGAGAGAGAAAGTAGCTGTCTTTAAACACCGCAATGAATATCACGCTTCCACGGAGGGTTCTCCTCAACAAAACGACACTCGTTTTGTCTCACTCCTCTCCGACATCGTCCGAGGAAACCAGAGCTGGAAACTTGCCTTCAGCGACCCTTCTATTTCCTCCACATTGAGGCCCCACCATGTTGAACAGCTCTTGATCCGAACCCTCGACGATTCCAAGTTAGCTTTGAGGTTCTTCAACTTCCTCGGTTTGCACAAGAGCTTCAACCATTCCACAACGTCCTTTGCCATCTTGGTTCATGCTCTTGTTCATCAGAAGCTCTTCTGGCCCGCCAATTCGCTCTTGCATACTCTTCTCTTACGTGGGTCGGAACCAAAATTCGTTTTTTCATGCTTCTTGGATTCTCATCGCAAATGTAAGTTTTTGTCAAATTTGGGTTTTGATTTGTTGGTTCAGAGTTACTTGCAAAATAGAAGGGTTTTAGATGCTGTGGTGGTTGCAAAGCTCATGCTTGAAAACAAGTTGTTGCCTGAAGTTAGAACACTGAGTGCGCTTTTGAATGGTTTATTGAGAATTAGAAGGTTTATAATGGTTTTGGAATTGTTTGATGAGTCGGTGAATGTGGGTGTTCGACCGGATTCTTATACTTGTTCGGCTGTCATTCGGAGCTTGTGTGAATTGAAGGATTTTTCCAAGGCTAAGGAGAAGGTTTGGTGGATGGAAGTGAATAAGTTTGATCTGAGTATCGTAACTTATAATGTCTTAATTCATGGGCTATGCAAGGGTGATCGCGTTTTGGAAGCTGTTGAGGTTAAAAGATCATTGAGTGAAAAGGGTCTGAAAGCAGATTTGGTTACATACTGCACCCTAGTTCTTGGTTTTTGTAGGGTGCAACAATTTGAGGCTGGATTGCATCTTTTTAATGAAATGATTGAATTCGGCTTTGTTCCGAGTGAAGCTGTTGTATCAGGGCTAGTGGATGGGTTAAGAAAGCAAGGAAAAATTGATGATGCTTATAATTTGGTTGTTCAGAAGGGGGAGGTTGGATGTCGCGATATCTTATTTTGA 2664 0.4054 MSSVSSIREGVQEPSDISTKDCSRGFKIWFETNVQPLRLSKWNEKNIMNFSMSGRKYTYHEFEALANQAFIGSADVEKEFWHEMVNGEKGTVEYGVNIEGSAFSCHPNDKLGRSKWNLKNFSRLPQSTLRLVGKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPAHAASQFENVVLHHVYNHKIMSKHGEDEAFQLLAHKTTMFPPNILLQHGVAVYKAVQKPGEFVISFPRAYHAGFSHGFNCGEAVNFAIGDWIPMGAIASTRYAYLKMLPIIPFEELLCKEAMQFYKSSKVRGSMSKHIDFQSYLATVASFVQFMQFYEKALLRLKASRECSISSNTVGTLICSNCHRDCYVAYLMCKHCYSLPICLYHDIALQRCSCGRKYTVYKRDNFLEFEDAAKSFEQEECVKLKLKGKVNFEGDMLSPGNDYDCIQDSHNNPWHEEKGSIKAVTSMGLVSEQKTREMTCLKIKLEKMKKEKTKHGRKRCSPTVNGYQKTTGFVRVLQHSDERESERESEREKVAVFKHRNEYHASTEGSPQQNDTRFVSLLSDIVRGNQSWKLAFSDPSISSTLRPHHVEQLLIRTLDDSKLALRFFNFLGLHKSFNHSTTSFAILVHALVHQKLFWPANSLLHTLLLRGSEPKFVFSCFLDSHRKCKFLSNLGFDLLVQSYLQNRRVLDAVVVAKLMLENKLLPEVRTLSALLNGLLRIRRFIMVLELFDESVNVGVRPDSYTCSAVIRSLCELKDFSKAKEKVWWMEVNKFDLSIVTYNVLIHGLCKGDRVLEAVEVKRSLSEKGLKADLVTYCTLVLGFCRVQQFEAGLHLFNEMIEFGFVPSEAVVSGLVDGLRKQGKIDDAYNLVVQKGEVGCRDILF 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00737 887 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 780 814 IPR002885 -
Adu03g00737 887 Pfam PPR repeat family 780 828 IPR002885 -
Adu03g00737 887 TIGRFAM PPR: pentatricopeptide repeat domain 782 815 IPR002885 -
Adu03g00737 887 TIGRFAM PPR: pentatricopeptide repeat domain 817 851 IPR002885 -
Adu03g00737 887 ProSiteProfiles JmjC domain profile. 113 283 IPR003347 -
Adu03g00737 887 SMART cupin_9 113 283 IPR003347 -
Adu03g00737 887 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 26 514 - -
Adu03g00737 887 Gene3D Cupin 8 329 - -
Adu03g00737 887 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 815 849 IPR002885 -
Adu03g00737 887 SUPERFAMILY Clavaminate synthase-like 107 309 - -
Adu03g00737 887 Coils Coil 474 494 - -
Adu03g00737 887 Gene3D Tetratricopeptide repeat domain 769 882 IPR011990 GO:0005515
Adu03g00737 887 Pfam JmjC domain, hydroxylase 143 266 IPR003347 -
Adu03g00737 887 Gene3D Tetratricopeptide repeat domain 580 767 IPR011990 GO:0005515
Adu03g00737 887 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 514 - -
Adu03g00737 887 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 710 744 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00737 Adu-Chr3 6863175 6867840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00737 110 304 C2H2 Transcription Factor Family AT5G04240 46.667 5.27e-53 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Adu03g00737 JmjC 7.6e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00737 - - ahf:112732604 855.899