Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00721 ATGGACACCTCAAATGAAATGGAACCTTTTCTGTTTCAAAACGAATCTCCTCATCATGAAGTAGAAGAGGAGGATGAGTACTCCATTATTGCTGCAGCAGAGATCAAAGAATCACCACCACCATCATCATCATCATCATCATCCACACCACAAAGCAGCTGCTTCACTACTTTGACCGACTCCGATATCAGGAAGCTCCAAACCACTGAAATCAACAAGGTATCATCTGTTCTTCTCATACCACAATCCGATGCGTGCCTTTTGCTTATCCACCATGGCTGGAGCGCCATGAAGGTCCACGAAGCTTGGTTCGAAGACGAGAAAAGCGTTCGAGAACTCGTTGGCTTGCTCGATAGTAGTAACAACATCATCCAGAGTTCTACATGCGAGATCTGCTTTGATGATTCAGTTTGGTACAAGAAGGTGGAGTATGCCAAGTGTGGCCATGGATACTGCATCGATTGTTGGAAGCACTACATCGATGAGAAGATCCAAGAAGGTTCTCATGAGTGCCTGAAACCGATGCGATGCCCTCATCCATCTTGTGAGGCTTCCTTGGAGATTGAAACTGTTCGGCGATTCGCCAGCGAGACAAACAAGAACATGTACGATCGTTTCTTGTTACGCTCGTATGTCGAAACCAGAAAGAATATAAAGTGGTGTCCAAGTCCTGCTTGCGATCTTGCTGTTCTTTACGAATCGGATGGAAATTACGCTAACAAATATGTTGAAGCTTGTTGCAGTAATGAACATAGGTTTTGCTGGGAATGTGGTGAAGATGGTCATAGACCTGTGAGTTGTGAAACGGTGGCTGAGTGGATGAAGAAGAATGTGGATGATTCTCAGAGCGTGATTTGGATCTCTGCTTTCACGAAGGAATGCCCCGATTGTGGGATTCGCATTGAGAAGAATGAGGGTTGCATGCAGATGATTTGCACTGTTTGTGGCTGCCGATTTTGCTGGCTATGTCTTTCTAAGTGGTCTCTGTGTTCCGCTTACGGTTGTAACCGTTTCTCAGCCCGGAATATTGAGACGCCCACAATGAACAATGGAAATGGCTATTTGGACTTGGAGAGGTACACTCACTATTATGAACGTTGGTTTACCAACGAATTCTCAAGGAAAAAATCGATTGAGATGATGGAGAAGTACCTGAACAATGAGAATATAAGAATCCTGTGCAAGGAATTTGAAAGGCGTGAAGATGATTTTGAGTTTGTGAAGAAGGCTTGGGAAGAGGTAATCGAGTGTAGGAAGTTGCTGAAGTGGACCTATGCATATGGTTACTTCATCCCTGAGGAGGAGAAAGCCAAGAAGGAGTTGTTCGAACACACGCAAGGCGTTGCTGAGAATGCATTGGAGAAGCTTCACAAGTTTGCCGAAACAATGCTGATGGAGATCCTGAATAAGAAGAAAGACGGTTTCGATAGGAATCGTCTGGAACTTTCTCATCTGACCGTTGTCACCAAGAATTTCTTTGATAATATGGTGACACAATTGGAGGATAGAGGGCTTGATGATGTGAATGTGAAGAGTTATGGTGAAAGCTCAAGCTCCTCCTCACTGTCTTCGTCGCCTCGAGGTGTGGTGAGGGATGGGATGACAGAGATTGGTCTCCGGAAATGCGGTTATTGCGGTTACTACAACCTTGCCAGCACTCTAGAGTGTCCCTGCATTGAGAAGAAATACAAATACCAGTGCTGGATCTGTTCTCGTGATCCTCGTGTCATTTGGTGTCCATTGCGTATGGTTAATTAA 1758 0.4482 MDTSNEMEPFLFQNESPHHEVEEEDEYSIIAAAEIKESPPPSSSSSSSTPQSSCFTTLTDSDIRKLQTTEINKVSSVLLIPQSDACLLLIHHGWSAMKVHEAWFEDEKSVRELVGLLDSSNNIIQSSTCEICFDDSVWYKKVEYAKCGHGYCIDCWKHYIDEKIQEGSHECLKPMRCPHPSCEASLEIETVRRFASETNKNMYDRFLLRSYVETRKNIKWCPSPACDLAVLYESDGNYANKYVEACCSNEHRFCWECGEDGHRPVSCETVAEWMKKNVDDSQSVIWISAFTKECPDCGIRIEKNEGCMQMICTVCGCRFCWLCLSKWSLCSAYGCNRFSARNIETPTMNNGNGYLDLERYTHYYERWFTNEFSRKKSIEMMEKYLNNENIRILCKEFERREDDFEFVKKAWEEVIECRKLLKWTYAYGYFIPEEEKAKKELFEHTQGVAENALEKLHKFAETMLMEILNKKKDGFDRNRLELSHLTVVTKNFFDNMVTQLEDRGLDDVNVKSYGESSSSSSLSSSPRGVVRDGMTEIGLRKCGYCGYYNLASTLECPCIEKKYKYQCWICSRDPRVIWCPLRMVN 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00721 585 Gene3D - 263 506 - -
Adu03g00721 585 Pfam IBR domain, a half RING-finger domain 202 267 IPR002867 -
Adu03g00721 585 Pfam IBR domain, a half RING-finger domain 284 327 IPR002867 -
Adu03g00721 585 MobiDBLite consensus disorder prediction 38 56 - -
Adu03g00721 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 215 IPR013083 -
Adu03g00721 585 SMART ibrneu5 201 267 IPR002867 -
Adu03g00721 585 SMART ibrneu5 271 330 IPR002867 -
Adu03g00721 585 ProSiteProfiles Zinc finger CCHC-type profile. 254 267 IPR001878 GO:0003676|GO:0008270
Adu03g00721 585 SUPERFAMILY RING/U-box 279 337 - -
Adu03g00721 585 MobiDBLite consensus disorder prediction 1 56 - -
Adu03g00721 585 MobiDBLite consensus disorder prediction 13 31 - -
Adu03g00721 585 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED 46 513 - -
Adu03g00721 585 SUPERFAMILY RING/U-box 203 274 - -
Adu03g00721 585 SUPERFAMILY RING/U-box 127 214 - -
Adu03g00721 585 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 46 513 IPR031127 GO:0004842|GO:0016567
Adu03g00721 585 ProSiteProfiles TRIAD supradomain profile. 125 339 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00721 Adu-Chr3 6708221 6714560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00721 55 556 ARIADNE family AT1G65430 39.464 1.25e-119 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00721 K11968 - gmx:100801350 400.208