Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00622 ATGGGAAGGTCACCTTGCTGTGAGAAAGCACACACAAACAAAGGTGCATGGACGAAGGAAGAAGATGACAGGCTCATATCTTACATTAGAGCTCATGGTGAGGGTTGCTGGAGATCTCTTCCAAAAGCGGCGGGCCTTCTCCGCTGCGGCAAGAGCTGCCGCCTCCGTTGGATCAACTATCTCCGCCCTGACCTCAAAAGAGGCAACTTCACTGAAGAAGAAGATGAACTCATCATCAAACTCCACAGTCTCCTTGGTAACAAGTGGTCGCTTATAGCTGGAAGATTGCCAGGGAGAACAGACAATGAGATAAAGAATTATTGGAACACTCACATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAACTCATAGGCCTCTCAATGATTCTTCTGCTTCACATCATCATCACAACAACCAAGAACAACAACAACAACAACAACAACAACCCTCTTCTCTTGTTGCAGCAGCCACAACCACCACCATATCTTTTGCTTCTTCTGTTTCTGCTTCTGCTTCCGCTGTTAAACAAGAACAAGATACTATTACTACTACTACTGCTACTACCACTACCACTACTAGTGCTACTTGCAACGCAAACATGTTTGGAATTATGGAGAAGAAGAACAAGAAGGATTATTCAAAGGGATCATCAATGGAAAGGTGCCCTGACTTGAATCTTGAGTTGACAATTAGTCCTCCACGCCATCTTGATGAACCTGATCACCAGAAATTCAGTGGAATAGAGAGAGCCCTTTGCTTTGTTTGCAGCTTGGGTTTGCAGAACAGCAAGGATTGCCGGTGTGGATTCGACACTAATGCTAATGCTAATGGTGGCACTAATAGTAATGGCACCACCACCACCACCACCACCACTGCTACTGGTGCTGGTTATGATTTCTTGGGCTTGAAAACAGGTAGTGTTTGGGATTACAGAAGCTTGGAAATGAAGTGA 960 0.451 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDSSASHHHHNNQEQQQQQQQQPSSLVAAATTTTISFASSVSASASAVKQEQDTITTTTATTTTTTSATCNANMFGIMEKKNKKDYSKGSSMERCPDLNLELTISPPRHLDEPDHQKFSGIERALCFVCSLGLQNSKDCRCGFDTNANANGGTNSNGTTTTTTTTATGAGYDFLGLKTGSVWDYRSLEMK 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00622 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Adu03g00622 319 CDD SANT 69 112 IPR001005 -
Adu03g00622 319 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Adu03g00622 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Adu03g00622 319 CDD SANT 16 61 IPR001005 -
Adu03g00622 319 Gene3D - 14 66 - -
Adu03g00622 319 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 274 - -
Adu03g00622 319 MobiDBLite consensus disorder prediction 139 157 - -
Adu03g00622 319 MobiDBLite consensus disorder prediction 122 157 - -
Adu03g00622 319 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 274 - -
Adu03g00622 319 SMART sant 66 114 IPR001005 -
Adu03g00622 319 SMART sant 13 63 IPR001005 -
Adu03g00622 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Adu03g00622 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Adu03g00622 319 Gene3D - 68 155 - -
Adu03g00622 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Adu03g00622 319 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00622 Adu-Chr3 5680731 5682444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00622 1 319 MYB Transcription Factor Family AT4G38620 56.037 2.66e-112 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu03g00622 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00622 K09422 - zju:107404478 351.673