Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00558 ATGGGGTTTAGAAAATCAAACAAGATTTCACAAAGTGCGGTCTTGAAGCAAATATTGAAGAGGTGTTCGAGCTTAGGGAAGAAGAATAGTCATAATAATGGATATGAAAATAATAACAACGATCCTTTTCCTCTTGATGTTCCAAAAGGGCACTTTGCTGTTTATGTTGGTGAGAATAGAAGAAGGTACATTGTTCCGATTTCATTGTTGGGTAATCCGGAATTTCAATGCCTTCTTCGTCAAGCCGAAGAAGAATTCGGGTTTGAACATGACATGGGTCTCACTATTCCTTGCGAAGAAGTTGTTTTTCTCCGCTCCTTAACTACTTCAAGTTGA 336 0.3839 MGFRKSNKISQSAVLKQILKRCSSLGKKNSHNNGYENNNNDPFPLDVPKGHFAVYVGENRRRYIVPISLLGNPEFQCLLRQAEEEFGFEHDMGLTIPCEEVVFLRSLTTSS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00558 111 Pfam Auxin responsive protein 20 107 IPR003676 GO:0009733
Adu03g00558 111 PANTHER SMALL AUXIN-UP RNA-RELATED 7 109 - -
Adu03g00558 111 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 109 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00558 Adu-Chr3 5317878 5318893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00558 5 103 Calmodulin-binding Proteins AT4G34750 46.465 8.44e-21 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00558 K14488 - rcu:107260773 156.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00558 03 5317878 5318893 Adu03g00558 03 5317878 5318893 ECH
Adu03g00558 03 5317878 5318893 Adu05g00908 05 11574905 11575531 ECH