Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00543 ATGAGAACCCTGTGCGACGTATGCGAAAACGCCGCTGCAATTTTATTCTGCGCCGCCGACGAGGCCGCTCTTTGCGGCTCTTGCGATGACAAGGTCCACATGTGTAACAAACTTGCTAGTAGACATGTTCGAGTTGGACTTGCTGATCCTAGTGATGTTCCTCGATGTGATATATGTGAAAATGCACCTGCTTTCTTTTACTGTGAGATAGACGGTAGTTCGTTGTGTCTACAATGTGATATGATAGTACATGTTGGTGGTAAAAGAACTCATGAAAGGTATCTCTTGTTGAGACAGAGAATTGAGTTTCCAAGTGACAAAACTGGTGGATTGGATGAATTTGGATTGCAAACTTTGGATCAAAATGAACCAAGGAGAGACCAGAGTCAATCAATCAAGCTGAATGCAAGAGATAACCACCAGAGTCACAATCACAAGGTTATATCAGTTACAATGCTAGAAAATAATATTGATGGTCATAGAAAAGTGGACAAAAAACTGTTTGATCTTAATACCAGGCCACAACGGATAAATGGTTCAACATCAAACAACCTGGATAAGGATATATTGGGCAGTAATAATCATGATTCTATTGGTGTTGTACCGGTAGAATTGTTCAAACAAGAAGCTGAGAAGTAA 639 0.4038 MRTLCDVCENAAAILFCAADEAALCGSCDDKVHMCNKLASRHVRVGLADPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRIEFPSDKTGGLDEFGLQTLDQNEPRRDQSQSIKLNARDNHQSHNHKVISVTMLENNIDGHRKVDKKLFDLNTRPQRINGSTSNNLDKDILGSNNHDSIGVVPVELFKQEAEK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00543 212 CDD Bbox1_BBX-like 4 47 - -
Adu03g00543 212 MobiDBLite consensus disorder prediction 174 191 - -
Adu03g00543 212 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Adu03g00543 212 CDD Bbox1_BBX-like 56 96 - -
Adu03g00543 212 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Adu03g00543 212 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Adu03g00543 212 MobiDBLite consensus disorder prediction 174 193 - -
Adu03g00543 212 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 212 - -
Adu03g00543 212 SMART bboxneu5 1 47 IPR000315 GO:0008270
Adu03g00543 212 SMART bboxneu5 51 96 IPR000315 GO:0008270
Adu03g00543 212 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Adu03g00543 212 Gene3D Classic Zinc Finger 2 95 - -
Adu03g00543 212 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00543 Adu-Chr3 5105465 5107760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00543 1 212 C2C2-CO-like Transcription Factor Family AT4G38960 59.434 4.05e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Adu03g00543 zf-B_box 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00543 - - gmx:100818604 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00543 03 5105465 5107760 Adu03g00543 03 5105465 5107760 ECH
Adu03g00528 03 4938335 4939972 Adu03g00543 03 5105465 5107760 ECH