Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00528 ATGAAGATCCAGTGTGATGTGTGTCACAAAGTGGAGGCCTCTTTCTTCTGTCCCTCGGATGAAGGAGCTCTATGCCATGGCTGTGATCGCACAATACACTGTGCCAACAAGGTTGCAACCAAACACACGCGCTTCTCTCTGCACCACCCTAACTCCAAAGACGCCCCTCTGTGTGATATCTGCCAAGAGAGACGTGCATATATATTTTGCCAAGAAGACAGAGCGATATTATGCAGTGAATGTGACGTTTCTATCCATGGAGCCAATGAATACACTAAGAAGCATAACAGGTTTCTTCTGACAGGTGTAAAGCTTGGTGCTGCTTCTTCTTCTTCTTCATCAGAGCCAACATCAATGTCCTCGAGTAGAGCCACAACAAGCTCTGAAGCAGCAAATAACCAGAATAATAATAATTATTATATGGGTAGTGACACGGGTTCAGTTTCAACAAGCAGCATTTCTGAGTATTTGATTGAGACCATACCCGGTTACTGCATGGAAGACCTTCTCGATGCTTCATTTCCGCCAAATGGTTTCTGTAAGGAGTATGAGCAGCAATCATTGTTTCAGGACCGAAATAATGTTCATCACTATGTCAGCATGTGTTCGTTTCCATTGGAAGCATGGTCACCATCATCAACCCCAACTTAG 651 0.4424 MKIQCDVCHKVEASFFCPSDEGALCHGCDRTIHCANKVATKHTRFSLHHPNSKDAPLCDICQERRAYIFCQEDRAILCSECDVSIHGANEYTKKHNRFLLTGVKLGAASSSSSSEPTSMSSSRATTSSEAANNQNNNNYYMGSDTGSVSTSSISEYLIETIPGYCMEDLLDASFPPNGFCKEYEQQSLFQDRNNVHHYVSMCSFPLEAWSPSSTPT 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00528 216 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 187 - -
Adu03g00528 216 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 187 - -
Adu03g00528 216 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Adu03g00528 216 CDD Bbox1_BBX-like 57 100 - -
Adu03g00528 216 Gene3D Classic Zinc Finger 1 97 - -
Adu03g00528 216 MobiDBLite consensus disorder prediction 108 138 - -
Adu03g00528 216 SMART bboxneu5 53 100 IPR000315 GO:0008270
Adu03g00528 216 SMART bboxneu5 4 47 IPR000315 GO:0008270
Adu03g00528 216 CDD Bbox1_BBX-like 5 47 - -
Adu03g00528 216 Pfam B-box zinc finger 55 96 IPR000315 GO:0008270
Adu03g00528 216 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00528 Adu-Chr3 4938335 4939972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00528 1 211 C2C2-CO-like Transcription Factor Family AT1G75540 43.529 1.77e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Adu03g00528 zf-B_box 4.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00528 - - gmx:100790232 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00528 03 4938335 4939972 Adu03g00528 03 4938335 4939972 ECH
Adu03g00528 03 4938335 4939972 Adu03g00543 03 5105465 5107760 ECH
Adu03g00528 03 4938335 4939972 Adu05g00891 05 11289148 11291650 ECH