Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00485 ATGTTGCATTGTGTAAACATGACAGTGTTGGAGAGGCAGCAAGCAAGAAGCAAGAAATGCATTCAACAAGATCTTCAAGAAAATGGATCCTCGTTATTTGACGTCTTCTCTGATGATTATTCCTCCCTAATTCACATGCCTCCTGCTCCTTCTTCTTCTTCCGCCATTTCCTCGTTCGTCTCTCCCAAGAAGAGAAAATCTGAAAGCCACAAGGTGGTTGTTGCTCAACAAAGTCATAACAAGAAGGACAAAAGAGTCAAAGTGAGTGCGGAAGAAGAGTCATCCAAAATGAGTGAGCAAATTACCAACAAGGACGAAGTAGCTTCTGCTGAGAATTCCATTAAAGGATCTACTTCGGAGCCTCACAATAACAAACCTGACTACATTCATGTCCGAGCTCGCCGCGGCCAAGCCACTGATAGTCACAGCCTTGCTGAAAGAGTTAGAAGGGAAAAGATTAGCGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGATGCAACAAGATTACAGGAAAAGCTGGAATGCTTGATGAAATCATAAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTGTCTATGAAATTAGCTGCTGTAAACCCAAGACTTGAACTCAACGTTGATGATCTCTTTGCCAAAGAGGTATTTCCTGCTTGTGCTCCAAATTTTGAAAGCATTGGAATGGGATCATCAGAGATGACTAATAACCCTGCTGCATATCTTGACTTCAATTCAGTTCAACAACTTGTATCATGTTCCAATGGATTAATCAACAACATTGGCATGAATATGACCCCTTCACCAGACATGGGTCTTAGGAAAACCATTGCTGCACCCCTCTCTGTGTCTTTACCAGAAACATTTCTTGACTCATCATCTTGTTTCAATCAAGTTTTACCTCCTTCAATTTGGGAAGGCGAATTCCAAATCCAAAACCTTTACAATGTGGCTTTTGATCAACCTAGAACATCATCTTTTCCACCTTCTCACCCATTTACAGGTTTAGTGGAAGCTAGTAATCTAAAGATGGAGATGGATATGTAG 1050 0.4105 MLHCVNMTVLERQQARSKKCIQQDLQENGSSLFDVFSDDYSSLIHMPPAPSSSSAISSFVSPKKRKSESHKVVVAQQSHNKKDKRVKVSAEEESSKMSEQITNKDEVASAENSIKGSTSEPHNNKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLELNVDDLFAKEVFPACAPNFESIGMGSSEMTNNPAAYLDFNSVQQLVSCSNGLINNIGMNMTPSPDMGLRKTIAAPLSVSLPETFLDSSSCFNQVLPPSIWEGEFQIQNLYNVAFDQPRTSSFPPSHPFTGLVEASNLKMEMDM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00485 349 MobiDBLite consensus disorder prediction 101 124 - -
Adu03g00485 349 SMART finulus 143 193 IPR011598 GO:0046983
Adu03g00485 349 MobiDBLite consensus disorder prediction 63 100 - -
Adu03g00485 349 Gene3D - 134 210 IPR036638 GO:0046983
Adu03g00485 349 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 61 327 IPR024097 GO:0006355
Adu03g00485 349 Pfam Helix-loop-helix DNA-binding domain 141 188 IPR011598 GO:0046983
Adu03g00485 349 CDD bHLH_AtBPE_like 127 212 - -
Adu03g00485 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 187 IPR011598 GO:0046983
Adu03g00485 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 204 IPR036638 GO:0046983
Adu03g00485 349 MobiDBLite consensus disorder prediction 48 62 - -
Adu03g00485 349 MobiDBLite consensus disorder prediction 48 126 - -
Adu03g00485 349 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 61 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00485 Adu-Chr3 4399169 4402291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00485 49 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 42.667 2.73e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu03g00485 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00485 - - gsj:114373950 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00485 03 4399169 4402291 Adu03g00485 03 4399169 4402291 ECH
Adu03g00485 03 4399169 4402291 Adu05g00786 05 9504870 9506349 ECH