Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00428 ATGCAGATGCATCACCTTCATCATCCTAATTCAACCACCATCATGCCACCTTCTTCTTCTCATCATTGGATATGGCCTCCAACACCATCTCTATCTCCATCTCCATCTCCATCCGCCACCTTCGCCAAGTCAACGCTGCCGCCACCGTCACCTTCTAAGTCTCCGGTGGACTTCAGCCCTCCCCTCATAGCAATGGTTGTTGTCATCGCCGCCGCCTTCCTCCTCGTTACATACTCCCGTCTCATAGCCCGCCACCTCACTCCTCCACTCCACCGCCTCATAAGACGCTTCCGCCGTCGCCGCCGCACTCATTCCTTCCTCCCTTCCTCCTCCGGCGACCTAGACTCCCTCCCTTACTACTACGACTCCCCCTTCGACCCTCATATCCCACCCTCCTCCTTCTCGCCTTACGGCCTCGACGACTCCGTCATCAAAACCATCCCTTTCTCCCTTTACGCCGCCCTATACGCCGGCGAACTCAACAGCACCTCCTCTCGCCGTTCATCTTCACGCCGCGACTGCGCCGTTTGCCTCTTCGAATTCGAAGACGATGATTACGTTCGAACCTTGCCTCTTTGCTCACACACCTTCCATGTTGATTGCATCGATGCTTGGCTTCGTTCCCACGCAAACTGCCCTCTCTGCCGCGCCGGGGTTCTCTCCGCCGCCTCGCCGTTTACTCCCATGTTCGCCGCCAGGATTCGACCAAGTCTCGACGACGATGCCATCTTCCACCGGATAGCGGCGGAGCACACTCCGCCTCCGCCGGAGGACTATCGTCATGCTACGACGGCGGTTTCGGCGGCGCCGGAGATTACCGTGGAAGTTCCCGAGGAGGGGTTCAACGGGAGGGACTTTCTATTGAAACGTTCTTATTCGTTTGGGTTCGAAAGGAGCTTGGCGTCGGAGAGGATGTTGGTGATGGAGCCCGCGACGGCGTCCCCGTGGCGGTACCGGAGAGGAGGGAGCAGCAGCAGTTTCTGGAGCAAGAGACCTTCGCCGTTTGGGTCTATTGGGAAGCCGAGGGTGTTCTCTTTCAGATACTACAGAGGGATGAAGTCACCGTTTTTCCGGCGAAGAGGGTTTTTTCCGTTGTCGGAGTCAAGCATGAGGTACGCCGGTGGCGGGAGCTCGTCGCGGCGGAGTAAGTCCATCGCTAGCCCCATGTTCTTAAGGTCTTCCGTATTGACCTCGGCAGCTGGCGCGGCGGGGTTTTCGTCGAGCCGGCTGAGATGCGGAGATCCCGAGGCGCTGCTTTCGCCGGAGAGGTTCAACAGAAGATGA 1284 0.5826 MQMHHLHHPNSTTIMPPSSSHHWIWPPTPSLSPSPSPSATFAKSTLPPPSPSKSPVDFSPPLIAMVVVIAAAFLLVTYSRLIARHLTPPLHRLIRRFRRRRRTHSFLPSSSGDLDSLPYYYDSPFDPHIPPSSFSPYGLDDSVIKTIPFSLYAALYAGELNSTSSRRSSSRRDCAVCLFEFEDDDYVRTLPLCSHTFHVDCIDAWLRSHANCPLCRAGVLSAASPFTPMFAARIRPSLDDDAIFHRIAAEHTPPPPEDYRHATTAVSAAPEITVEVPEEGFNGRDFLLKRSYSFGFERSLASERMLVMEPATASPWRYRRGGSSSSFWSKRPSPFGSIGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSMRYAGGGSSSRRSKSIASPMFLRSSVLTSAAGAAGFSSSRLRCGDPEALLSPERFNRR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00428 427 Pfam Ring finger domain 173 216 IPR001841 -
Adu03g00428 427 MobiDBLite consensus disorder prediction 1 20 - -
Adu03g00428 427 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Adu03g00428 427 SUPERFAMILY RING/U-box 173 222 - -
Adu03g00428 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 220 IPR013083 -
Adu03g00428 427 SMART ring_2 174 215 IPR001841 -
Adu03g00428 427 CDD RING-H2_PA-TM-RING 173 216 - -
Adu03g00428 427 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 28 396 - -
Adu03g00428 427 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 28 396 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00428 Adu-Chr3 3901014 3903131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00428 52 427 C3H Transcription Factor Family AT3G18930 52.273 1.22e-101 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00428 - K19041 gmx:100795347 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00428 03 3901014 3903131 Adu03g00428 03 3901014 3903131 ECH