Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00411 ATGCCTCGCCCTTCTTTCCATAAGGTTATTCTAACCACCACTCTTCAATCCAAGCAACTGAGAGTACCAGATAATTTTCTGAGAAAATATGGGGGTGAGCTTTCCTCCTTTGTTAACCTGTCTGTTCCCGATGGTAGTTCGTGGCGCGTGGGACTGAAAAAGGTAGACAACAAATTTTGGTTCATTGATGGTTGGGCAGAATTTGTTCAGCGCTATTCCATCGGTGTTGGATACCTTTTAGCTTTCAGATACGAAGGAAAGTCGAATTTCAGTGTTCACATTTTTAATTTGGCTACTGCTGAGATAAATTATCAATCACCCACACGAAGCAGCAATGAAGGATCTTACTTTGCAAATCGCCTCAAAATTTTTGAAGAAATGGAAGATGAAGACTTCACTGAATCCAAACCAGCCTTGCAGAATCTATTTAACGGGTCAAAACTTAATAGTGTAAACTGGGGTGAGGGCGGGAATGCTCTTCCTGCGAAAAGTGCTAGAGATATAGGTCTTCAGTTTAATGCAATTGAGTTTAAAAAATCTACTGATGAACTGAAATTGCGTGCTTCTTTCGAGGAAAAGGCCAAAAAAACTGCAAGAAAGAAGCGTAAATCTGAACCTGGAAGTGCAGAAGGCCAGGAAGCTTCTGATGAACAAGAAGAGGAGAGAGAAATGCGCATTAGATTCTATGAAAGTGCTTCTGCAAGGAAAAGAACCGTGACGGCTGAGGAAAGAGAAAAGGCTGTCAACGAAGCGAAAGCATTTGAACCATCTAATCCTTTCTGCCGGGTTGTCCTGCGGCCCTCCTATCTATATAGGGGATGCATAATGTACTTGCCATCTTGCTTTGCAGAAAAGTATTTGAATGGTGTTTCGGGATTCATCAAACTTCAACACCCTGATGGGAGACAGTGGCCAGTTCGCTGCCTTTATCGAACGGGTAGGGCTAAGTTAAGCCAGGGATGGTTCGAATTTGCGATAGACAACAATCTAGGCGAAGGCGACGTCTGTGTGTTTGAGCTGCTTAGAATGAAGGAAGTAGTGCTGCAAGTTACTATATTTCGCGTCACCGACGAGGCAGAATTCTTGAGCCCTTCTTTGCTGCTTACCCAAAATGAGAACCAGGCCAAGCTGTTGAGAAGCCCCATGCAGCAGCATCTCCTTACATCACCTAAAAGTTAG 1179 0.436 MPRPSFHKVILTTTLQSKQLRVPDNFLRKYGGELSSFVNLSVPDGSSWRVGLKKVDNKFWFIDGWAEFVQRYSIGVGYLLAFRYEGKSNFSVHIFNLATAEINYQSPTRSSNEGSYFANRLKIFEEMEDEDFTESKPALQNLFNGSKLNSVNWGEGGNALPAKSARDIGLQFNAIEFKKSTDELKLRASFEEKAKKTARKKRKSEPGSAEGQEASDEQEEEREMRIRFYESASARKRTVTAEEREKAVNEAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKYLNGVSGFIKLQHPDGRQWPVRCLYRTGRAKLSQGWFEFAIDNNLGEGDVCVFELLRMKEVVLQVTIFRVTDEAEFLSPSLLLTQNENQAKLLRSPMQQHLLTSPKS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00411 392 MobiDBLite consensus disorder prediction 195 222 - -
Adu03g00411 392 CDD B3_DNA 259 354 IPR003340 GO:0003677
Adu03g00411 392 SUPERFAMILY DNA-binding pseudobarrel domain 254 355 IPR015300 -
Adu03g00411 392 PANTHER B3 DOMAIN-CONTAINING 1 171 - -
Adu03g00411 392 PANTHER B3 DOMAIN-CONTAINING 212 384 - -
Adu03g00411 392 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Adu03g00411 392 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Adu03g00411 392 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 171 - -
Adu03g00411 392 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 212 384 - -
Adu03g00411 392 ProSiteProfiles B3 DNA-binding domain profile. 261 356 IPR003340 GO:0003677
Adu03g00411 392 CDD B3_DNA 4 96 IPR003340 GO:0003677
Adu03g00411 392 Gene3D - 238 358 IPR015300 -
Adu03g00411 392 SMART B3_2 261 356 IPR003340 GO:0003677
Adu03g00411 392 SMART B3_2 6 98 IPR003340 GO:0003677
Adu03g00411 392 Pfam B3 DNA binding domain 264 355 IPR003340 GO:0003677
Adu03g00411 392 Pfam B3 DNA binding domain 14 95 IPR003340 GO:0003677
Adu03g00411 392 Gene3D - 1 98 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00411 Adu-Chr3 3807880 3810655 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00411 1 360 B3 DNA Binding Superfamily AT3G18990 55.000 2.98e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu03g00411 B3 8.5e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00411 - - gmx:100813285 566.614