Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00409 ATGGTTGCGTTCTGTGTATGTAGCTATGGCCAAACCCAAGGTGCTGGAGGAGGAAGTGGAGGTGGTGGTGGTGGAGGAGCAACCCCGTCTCAGAAATTGACAACCAATGATGCCTTAACTTATTTGAAGGAAGTGAAAGACATGTTTCAGGATCAGAGAGAAAAATATGACTTGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAGAGGACTGACACTGCTGGTGTCATAGCAAGGGAGATAATTGTGAAGATTGGAGATGGATTGAAGAAATAA 276 0.442 MVAFCVCSYGQTQGAGGGSGGGGGGGATPSQKLTTNDALTYLKEVKDMFQDQREKYDLFLEVMKDFKAQRTDTAGVIAREIIVKIGDGLKK 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00409 91 SUPERFAMILY PAH2 domain 28 79 IPR036600 GO:0006355
Adu03g00409 91 Gene3D Paired amphipathic helix 37 83 IPR036600 GO:0006355
Adu03g00409 91 ProSiteProfiles PAH domain profile. 31 91 IPR003822 GO:0006355
Adu03g00409 91 PANTHER SIN3B-RELATED 13 79 IPR039774 GO:0003714
Adu03g00409 91 PANTHER HISTONE DEACETYLASE INTERACTING DOMAIN, SIN3-RELATED 13 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00409 Adu-Chr3 3792123 3793185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00409 20 79 WRKY Transcription Factor Family AT4G12020 60.000 3.07e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Adu03g00409 PAH 7.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00409 K11644 - adu:110279622 142.51