Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00398 ATGGAAGATCAGTTTTTCTCTGAGGGAGAGGGAATTGGGTATTGGACACCTCCTGGCGCTCAATTCGATGGACCAAGCATGATAGACAACGGAATAAAAAATCTTGTATCAGAGGAGATGCTTGACAACCTCCCTGATCTCATGAACTTCGATAACCTTGCTGGTTGGGGTAATATTCCATCTGTGACTGATCATAATTTAGATAATGAAATTTCATCACTTGCCTCTATGCAGTATTCTCCACCTGATGCATTCAGTTTAGTGGAACAGGACAATGATCCATACTTTATGACAAAAGATTGTGGAAATTATAATGCTACTGAAACCTCCTTGGGTTTCGATGAGAAGGCTGTGTTACAGCAATTGGAGACCCAACTTGGGTTGTCAGAAGATGCAAATGATATGAATAACATAAATGGATCACTTCGAGAATTGAGTGCTGCTGACATGGGAAATTGCTTGGTGCCTAGACCATTTGCTTGGTCGCTTGATGAGAGAATGCTGAGGGCTATGGACTTGTTTAAGGAATCAGTTGGTGATGGAATATTGACACAAGTTTGGGCACCAATGAAGCATGGTAATGACTTCATCTTAAGCACAAGCGAGCAACCCTATTTGCTAGATCACATGCTAGCTGGATACCGAGACGTGTCGAGGCAATTTACCTTTTCTGCTGAAGATAAACCAGGGTCTTTTCCAGGGCTTCCCGGACGTGTGTTTAACTCCCAAATTCCTGAATGGACCTCCAATGTTGGGTACTACAATAAAAGTGAGTACCTGAGGGTGGAGCATGCAATTAATCACGAGGTTCGTGGATCAATTGCGGTTCCCATAATTGATACGCTCGCTGAACCACCTTGTTGTGCTATACTAGAACTTGTCACTACAAAGGAAAAGACTGATTTTGACAGAGAACTAGAAATTGTTAGCAGTGCACTCCAGCTTGTTAATTTAAGGACTACTACGCCTCCACGACTTATGTCCCAGTGTCTATCAAATAACAAAAGAGCAGCTTTAGCAGAGATAATTGATGTGTTACGAGCTGTGTGTCATGCGCATCGTTTGCCACTGGCATTGACATGGATCCCCTGTTATTATAGTGAGGGAATAGGAGATGAAGCTTCAAGGATACGGATTAAAGATGGGGGTAGAATTCCTGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTTGCTATATAAATGATATTGTGGTAGGAGGATTTGTTCATGCATGTGTTGAACATTATCTCGAGGAAGGGCAAGGTGCAGCTGGGAAAGCTCTTCAATCAAATCGTCCATTCTTCTGTCCCGATGTGAAGGCCTATAATATTAGTGAATATCCCCTTGTTCACCATGCGCGAAAATATAAGTTGAATGCTGCCGTTGCAGTCAGGCTAAGGAGTATTCATACCAATGATGATGATTACATAATAGAATTCTTTCTACCTGTCAATATGAATGGAAGTGAAGAACAGCAACTTTTATTAGACAATCTATCAGATACTGTGCAGAGAATGTGTCAGAGTTTGAGGATAGTTTCGGATGCTGAATTACACGGGATAGAAGGTTCACAAGTGCAGTTTTCAAAGGAAGAAGGCTCTCATATGGCGCCGGATGGTGACCATGATTTGGTCCAGCCTATGTCCATGACAAACAATGAAACTGAAGCTGCTCATAACCAGGCAATGGAGGGATCAAGAAAGCAGATTGAGAAAAAGAGAAGTCCAGTGAAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCTGTAGTCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACCACCCTGAAAAGGATATGCAGGCAACACGGAATTGCAAGATGGCCATCGCGCAAGATTAACAAAGTTAATCGTTCGTTAAAGAAAATACGAACCGTGCTCGACTCGGTCCAAGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACAAGGGGGGATTTATGTCAGTAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTTCGGAAGAAATGTTCTGTAAAATATCCTGATCCTGCATCTGGTAGCAAAGATTCAAAGCCAATAGCCATGGGTGATGGTGGATTACGGCAGGAACCCTTTCCGGTTTCTATTTTGGAAAGTTTTTGGTGTGATATAGCATATCACAGTCCAAACTCCCTGGTTGCCGATGAGATGGAAACTTATCTGAATGGGGCTGACAAGCTCGGCGAGCATTACAATCCCACTACTTCAAGCATGACAGACTCGTCGAATGGCTCTTGCTCAATTTTGCGCTCCAGCTCATCTGCCTCTGGGAAATTTGAGAATCGGAAACATTTGAAAGCCAAATCACCTTGTGTTGATAGTGGATCAAAAATTATTGTCAAAGCTGCCTACGGAGAAGATTTGATCCGTTTCAAGTTTGATCCTGCAGCTGGTTGTCTCCAGCTCTATGAAGAAGTTGCAGCAAGATTCAAATTACAAATCGGGTCATTCCAACTCAAGTATCTCGACGATGAAGAGGAATGGGTGAGGATGGCAAATGACTCAGATTTGGAAGATTGCATAGAAATGTTGGATGATCTTGACACCCGTGCTGTGAAATTACTTGTTCACGACATGCCTAGTGGTTTGAGCAGCCTTGGCAGTAACGGTTGA 2667 0.4267 MEDQFFSEGEGIGYWTPPGAQFDGPSMIDNGIKNLVSEEMLDNLPDLMNFDNLAGWGNIPSVTDHNLDNEISSLASMQYSPPDAFSLVEQDNDPYFMTKDCGNYNATETSLGFDEKAVLQQLETQLGLSEDANDMNNINGSLRELSAADMGNCLVPRPFAWSLDERMLRAMDLFKESVGDGILTQVWAPMKHGNDFILSTSEQPYLLDHMLAGYRDVSRQFTFSAEDKPGSFPGLPGRVFNSQIPEWTSNVGYYNKSEYLRVEHAINHEVRGSIAVPIIDTLAEPPCCAILELVTTKEKTDFDRELEIVSSALQLVNLRTTTPPRLMSQCLSNNKRAALAEIIDVLRAVCHAHRLPLALTWIPCYYSEGIGDEASRIRIKDGGRIPGEKTVLCIEESACYINDIVVGGFVHACVEHYLEEGQGAAGKALQSNRPFFCPDVKAYNISEYPLVHHARKYKLNAAVAVRLRSIHTNDDDYIIEFFLPVNMNGSEEQQLLLDNLSDTVQRMCQSLRIVSDAELHGIEGSQVQFSKEEGSHMAPDGDHDLVQPMSMTNNETEAAHNQAMEGSRKQIEKKRSPVKKNVSLSVLQQYFSCSLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNRSLKKIRTVLDSVQGVEGGLKFDPYKGGFMSVGSSNQEINAHKSSLFRKKCSVKYPDPASGSKDSKPIAMGDGGLRQEPFPVSILESFWCDIAYHSPNSLVADEMETYLNGADKLGEHYNPTTSSMTDSSNGSCSILRSSSSASGKFENRKHLKAKSPCVDSGSKIIVKAAYGEDLIRFKFDPAAGCLQLYEEVAARFKLQIGSFQLKYLDDEEEWVRMANDSDLEDCIEMLDDLDTRAVKLLVHDMPSGLSSLGSNG 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00398 888 PANTHER PROTEIN NLP8 5 695 IPR045012 GO:0003700
Adu03g00398 888 PANTHER PROTEIN NLP8 727 887 IPR045012 GO:0003700
Adu03g00398 888 ProSiteProfiles RWP-RK domain profile. 561 649 IPR003035 -
Adu03g00398 888 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 727 887 - -
Adu03g00398 888 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 695 - -
Adu03g00398 888 Pfam RWP-RK domain 581 629 IPR003035 -
Adu03g00398 888 Gene3D - 792 879 - -
Adu03g00398 888 SUPERFAMILY CAD & PB1 domains 789 879 - -
Adu03g00398 888 SMART PB1_new 795 877 IPR000270 GO:0005515
Adu03g00398 888 Pfam PB1 domain 798 876 IPR000270 GO:0005515
Adu03g00398 888 ProSiteProfiles PB1 domain profile. 795 877 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00398 Adu-Chr3 3653460 3666693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00398 1 888 NLP Transcription Factor Family AT2G43500 46.130 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Adu03g00398 PB1 6.9e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00398 - - ahf:112736799 1612.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01103 08 19863456 19867456 Adu03g00398 03 3653460 3666693 PCT