Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00338 ATGGTCATGGCAGATTCAACCTACAGCAACTCCAATAATGAGTATAATACTAACAACCTCCTTCTCTTGGATCTCAATTATTCTCCTTCTCCTTCTCCATCTTCTTCTCCTTCTACCACCAATTCCTTCAATTACTTTCATCCTCCACCAATCACAACAACACATCAACATCAACAACAACTAGATCTTCAATCTTCATTTTCTGCCATGGAAGTTCAAAACAACAATAACAATAAGGTGCCTCTACACTTAGGGCTTCAAAGCACGGTAGTAGTACAAGATTCTTCAGTATTAGAAGAAGATGAAGAAGAAGAAAAAATCACTGTTGCTTCTGAATATGTTATGTCAAATGGAATTAACAGAGGACAGTATTGGATCCCAACACCTACTCAGATCCTCATCGGTCCTACACAGTTCGCATGCCCCCTTTGCTTCAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGTCCAGAATCTCTAAGGGGAACACAACCAACAGCAATGTTGAAACTGCCATGTTATTGCTGTGCAGCAGGATGCAAGAACAACATAGACCACCCTAGAGCAAAACCACTCAAAGATTTCAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGACTTAAACCCTTCACTTGTAGGAAGTGTTCCAAGGCATTTGCTGTGAGAGGTGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCGATGGTATTGCTCTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAGGATCATATCAAGGCATTTGGAAATGGACACAAATCTTATGCAATTAATGACCATCTTTGTGTTGATCAAGATGATAATAATGGAGCTGCATCTGAAGTTGAAGAAAATGATTCATTCCACTCCTAG 918 0.4009 MVMADSTYSNSNNEYNTNNLLLLDLNYSPSPSPSSSPSTTNSFNYFHPPPITTTHQHQQQLDLQSSFSAMEVQNNNNNKVPLHLGLQSTVVVQDSSVLEEDEEEEKITVASEYVMSNGINRGQYWIPTPTQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCYCCAAGCKNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFTCRKCSKAFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGNGHKSYAINDHLCVDQDDNNGAASEVEENDSFHS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00338 305 PANTHER ZINC FINGER PROTEIN WIP2 30 300 - -
Adu03g00338 305 SUPERFAMILY beta-beta-alpha zinc fingers 134 161 IPR036236 -
Adu03g00338 305 SUPERFAMILY beta-beta-alpha zinc fingers 205 243 IPR036236 -
Adu03g00338 305 PANTHER ZINC FINGER PROTEIN WIP2 30 300 IPR043584 GO:0003700|GO:0010468
Adu03g00338 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Adu03g00338 305 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Adu03g00338 305 Gene3D Classic Zinc Finger 182 272 - -
Adu03g00338 305 SMART c2h2final6 139 161 IPR013087 -
Adu03g00338 305 SMART c2h2final6 223 243 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00338 Adu-Chr3 3043625 3045453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00338 100 304 C2H2 Transcription Factor Family AT3G57670 76.098 6.88e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu03g00338 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00338 - - aip:107632313 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01177 08 20758607 20760274 Adu03g00338 03 3043625 3045453 PCT